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cachedas |
Wiki
The master copies of EMBOSS documentation are available at http://emboss.open-bio.org/wiki/Appdocs on the EMBOSS Wiki.Please help by correcting and extending the Wiki pages.
Function
Generate server cache file for DAS servers or for the DAS registryDescription
Contacts the DAS registry to find DAS servers and writes database definitions for them to a server cache file.Usage
Here is a sample session with cachedas
% cachedas -servername tdas -auto -cachefile ~/.embossdata/qatests.server.dasregistry host = www.dasregistry.org path = /das/sources port = 80 DAS sources and descriptions DS_112 structure A reference server for protein structure annotations. Serves 3D coordinates of protein structures. DS_114 signalp SignalP (http://www.cbs.dtu.dk/services/SignalP) predictions for UniProt. DS_115 netphos NetPhos (http://www.cbs.dtu.dk/services/NetPhos) predictions for UniProt. DS_118 prop ProP (http://www.cbs.dtu.dk/services/ProP) predictions for UniProt. DS_119 transmem_pred Membrane protein annotation. Presenty This DAS server contains UNIPROT and IPI human proteins. The annotation si done using 4 different predictors: TMHMM2.0, MEMSAT, ENSEMBLE_1.0 and PRODIV_TMHMM_0.91 DS_120 Uniprot 2010_09 SUPERFAMILY domain annotation for Uniprot 2010_09. DS_121 secretomep SecretomeP (http://www.cbs.dtu.dk/services/SecretomeP) predictions for UniProt. DS_126 Compara Phenotypes Phenotypes linked through homologues and protein families DS_129 Takifugu rubripes 59_4m (all transcripts) SUPERFAMILY domain annotation for Takifugu rubripes 59_4m (all transcripts). DS_133 cbs_ptm Aggregation server for CBS predictions related to post-translational modifications of proteins. DS_134 cbs_func Aggregation server for CBS predictions related to protein function and structure. DS_146 ensp_pdb_mapping If you click on a feature of this DAS track, SPICE can be launched from ENSEMBL. - Mapping of ENSP protein sequences to protein structures. Based on the Compara ENSP - UniProt and the MSD - UniProt to PDB mapping. DS_150 s3dm Small hydrogen bonded motifs, beta turn like. DS_154 nscsnp deleterious Machine learning approach used SWISSPROT variants annotated as disease/neutral as training dataset. Predictions made on all ENSEMBL nscSNPs as to their disease status PMID: 16630345 DS_180 IMGT DAS Sources Homo sapiens IG and TR genes located using IMGT reference sequences. DS_181 snp_hsa/bioinfo.cipf DS_182 ens_zfish7_array ens_zfish7_array DS_183 ens_zfish7_enhancer ens_zfish7_enhancer DS_187 lipop LipoP (www.cbs.dtu.dk/ser vices/LipoP) predictions for UniProt. DS_188 netnes NetNES (www.cbs.dtu.dk/ser vices/NetNES) predictions for UniProt. DS_190 ens_zfish7_tilling ens_zfish7_tilling DS_191 hsa35pep A reference and annotation server for Ensembl peptides. Provides exon structure and SNPs as features DS_192 alig_uniprot_ensp an alignment server that provides alignments between Ensembl peptides (ENSP) and UniProt DS_193 ens_35_segdup_washu Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_194 ens_35_segdup_toronto Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_195 ens_35_segdup_wssd Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_196 ens_35_segdup_sanger Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_197 ens_35_segdup_washufilt Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_199 CSA - literature Catalytic Site Atlas (http://www.ebi.ac.uk/thornton-srv/databases/CSA/) literature annotations mapped onto Uniprot. DS_200 CSA - extended Catalytic Site Atlas (http://www.ebi.ac.uk/thornton-srv/databases/CSA/) literature annotations extended to putative sites by homology. DS_210 SMART SMART domain annotations for Uniprot/Ensembl DS_212 FunCUT FunCUT is a method for the automatic annotation of protein function based on family identification. DS_216 SAS protein binding Putative protein-protein binding sites by homology with those observed in crystallized protein structures. DS_217 SAS ligand binding Putative ligand binding sites by homology with those observed in crystallized protein structures. DS_218 SAS DNA binding Putative protein-DNA binding sites by homology with those observed in crystallized protein structures. DS_222 ens_ncbi_35_omimg OMIM morbidmap data mapped to NCBI35 assembly locations DS_224 toronto_poly Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_226 GENCODE sequences ENCODE peptide reference server. DS_227 GENCODE alignments Local and global gapped alignments with UniProt and UniParc using Exonerate 1.0. DS_228 GENCODE Pfam Putative domains predicted using Pfam HMMs on ENCODE peptides. DS_229 GENCODE PDBsum Structurally derived information from PDBsum mapped by homology to ENCODE peptides (http://www.ebi.ac.uk/thornton-srv/ENCODE/pdbsum.html). DS_237 3DEM_Reference Entries are 3D electron microscopy density maps of macromolecular complexes and subcellular structures from EMDB, the Electron Microscopy Data Base (http://www.emdatabank.org). DS_238 3D-EM_EMDB Annotation server for 3D-EM volume data. Most textual data parsed from EMDB. DS_239 3DEM_Alignment Alignment DAS service for 3D electron microscopy. This service provides alignment for Volume Map - PDBresnum DAS coordinate systems, based in 3d-EM Hybrid models, as stored in the EBDataBank. DS_241 pfam The Pfam DAS services offers sequence, feature and types capabilities. The features response returns Pfam-A, Pfam-B domains and other features like Active site, transmembrane region, disulfide bridges, coiled coil, signal peptide and low complexity region for the sequences. The sequence database (pfamseq) is the same as the current version of Pfam. It is essentially comprised of Uniprot with artificial chimeric sequences removed. DS_248 HGNC The HGNC (HUGO Gene Nomenclature Committee) DAS Reference Server serves up-to-date approved gene symbols and names for human genes from the latest HGNC dataset, mapped via Entrez Gene ID. DS_251 Ensembl Human Genes The Ensembl human Gene_ID reference source, serving sequences and non-location features. DS_312 ens_zfish7_baxendale_est ens_zfish7_baxendale_est DS_313 ens_zfish7_carp_est ens_zfish7_carp_est DS_327 InterPro InterPro (http://www.ebi.ac.uk/interpro/), a database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. This data source contains all InterPro member database signature matches to UniProtKB protein sequences. DS_334 GSC_mRNA Comparison between human and tetraodon genomes and Genoscope mRNAs sequences (for details see http://www.genoscope.cns.fr/cgi-bin/ggb/BioSapiens/gbrowse/GSC_mRNA?help=citations). DS_335 ExoFish Exofish (Exon Finding by Sequences Homology, http://www.genoscope.cns.fr/externe/tetraodon/what_exofish.html) is a genomic tool based on the assumption that coding regions are more conserved than non-coding regions through evolution. Therefore, if it compare the genomes of two species, regions of homology should reveal coding regions. Exofish is performed with sequences of Tetraodon nigroviridis, and calibrated to annotate human genome. DS_337 viraldas_hiv1_hxb2 The ViralDAS Server for HIV-1 is the first DAS Server for a viral genome. It was specifically adapted from the default DAS server type to meet the requirements posed by a viral genome: in addition to the genome, transcripts and proteins which are usually found in eukaryotic DAS servers, it has been enhanced to display polyproteins and their cleaved products. DS_341 everest A positional automatic identification and clustering of protein domains. DS_342 protonet ProtoNet (http://www.protonet.cs.huji.ac.il) provides automatic hierarchical classification of protein sequences (non-positional protein annotations). DS_359 Phobius Phobius - combined prediction of transmembrane topology and signal peptides for Uniprot. http://phobius.cgb.ki.se/ or http://phobius.binf.ku.dk/ DS_401 PPDB_das PPDB (http://ppdb.tc.cornell.edu) is a specialized proteome database dedicated to plant plastids. It is a joint project between Klaas J. van Wijk Lab and the Computational Biology Service Unit of Cornell University. The main objective is to provide a centralized, curated, data deposit for predicted and experimentally determined plastid proteins in Arabidopsis thaliana and maize (Zea mays), their annotated functions, as well as their experimental and predicted molecular and biophysical properties. All gene models in the Arabidopsis nuclear and organellar genomes as annotated by TAIR, as well as all maize EST assemblies (ZmGI) and maize genome sequence assemblies (AZM) as annotated by TIGR. The das server of PPDB provide the peptide sequences that are identified in each protein sequences. DS_405 SNPbox SNPbox analysis of all Ensembl exons for homo sapiens DS_406 OMA OMA (Orthology Prediction from ETH Zurich) DS_407 pfamFullAlign Retrieves the full sequence alignments for a Pfam entry. DS_408 pfamSeedAlign Retrieves the seed sequence alignments for a Pfam entry. DS_409 uniprot DAS 1 reference server for sequence and features from UniProt. UniProt (Universal Protein Resource) is the worlds most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR. Alternative to the 'aristotle' dsn on the same DAS server. Note: New version launched on 05/09/2008. Support for keywords(KW) and comments(CC). Ontologies have also been introduced into the annotations. DS_410 IPI DAS 1 reference server for sequence and features from IPI. IPI provides a top level guide to the main databases that describe the proteomes of higher eukaryotic organisms. IPI: 1. effectively maintains a database of cross references between the primary data sources 2. provides minimally redundant yet maximally complete sets of proteins for featured species (one sequence per transcript) 3. maintains stable identifiers (with incremental versioning) to allow the tracking of sequences in IPI between IPI releases. IPI is updated monthly in accordance with the latest data released by the primary data sources. Alternative to the aristotle dsn on the same DAS server (DS_109) DS_411 IPI Tryptic Peptides Theoretical tryptic peptides based upon a complete and successful digest of the requested proteins with trypsin. DS_412 UniProt GO Annotation The GOA project aims to provide high-quality Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) and International Protein Index (IPI) and is a central dataset for other major multi-species databases; such as Ensembl and NCBI. DS_413 UniProt Tryptic Peptides Theoretical tryptic peptides based upon a complete and successful digest of the requested proteins with trypsin. DS_414 uniparc UniProt Archive (UniParc) is part of UniProt project. It is a non-redundant archive of protein sequences extracted from public databases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, PIR-PSD, EMBL, EMBL WGS, Ensembl, IPI, PDB, PIR-PSD, RefSeq, FlyBase, WormBase, H-Invitational Database, TROME database, European Patent Office proteins, United States Patent and Trademark Office proteins (USPTO) and Japan Patent Office proteins. DS_415 RSBP Parts RSBP Parts DS_438 Canis_familiaris.VEGA-clone.transcript Annotation source (returns clones) for Canis_familiaris transcript DS_439 Canis_familiaris.VEGA-clone.translation Annotation source (returns clones) for Canis_familiaris translation DS_440 Sus_scrofa.VEGA-clone.transcript Annotation source (returns clones) for Sus_scrofa transcript DS_441 Sus_scrofa.VEGA-clone.translation Annotation source (returns clones) for Sus_scrofa translation DS_442 Cosmic Transcripts Transcripts from Cosmic DS_443 Cosmic Transcripts Transcripts from Cosmic mapped to Human NCBI 36 DS_444 Cosmic Mutations Mutations from Cosmic DS_445 Cosmic Mutations Mutations from Cosmic mapped to Human NCBI 36 DS_490 HUGO text mining PubMed text-mining via HUGO symbol DS_493 eQTL cis RI fat Expression Quantitative Trait Loci (cis) for Rattus norvegicus DS_494 eQTL cis RI kidney Expression Quantitative Trait Loci (cis) for Rattus norvegicus DS_495 eQTL trans RI fat Expression Quantitative Trait Loci (trans) for Rattus norvegicus DS_496 eQTL trans RI kidney Expression Quantitative Trait Loci (trans) for Rattus norvegicus DS_497 Sjoblom Breast and Colon Cancer associated Mutations described by Sjoblom et al. (Science. 2006,314(5797):268-74) DS_498 HomoMINT Persico, M. et al. (2005). HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms. BMC Bioinformatics, 6 Suppl 4:S21. DS_499 CCSB-HI1 Rual, J.-F. et al. (2005). Towards a proteome-scale map of the human protein-protein interaction network. Nature, 437(7062):1173-1178. DS_500 Sanger Lehner, B. and Fraser, A. G. (2004). A first-draft human protein interaction map. Genome Biol, 5(9):R63. DS_501 Sanger-core Lehner, B. and Fraser, A. G. (2004). A first-draft human protein interaction map. Genome Biol, 5(9):R63. DS_502 POINT Huang, T.-W. et al. (2004). POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics, 20(17):3273-3276. DS_503 OPHID Brown, K. R. and Jurisica, I. (2005). Online predicted human interaction database. Bioinformatics, 21(9):2076-2082. DS_504 MDC Stelzl, U. et al. (2005). A human protein-protein interaction network: a resource for annotating the proteome. Cell, 122(6):957-968. DS_505 HiMAP Rhodes, D. R. et al. (2005). Probabilistic model of the human protein-protein interaction network. Nat Biotechnol, 23(8):951-959. DS_506 HiMAP-core Rhodes, D. R. et al. (2005). Probabilistic model of the human protein-protein interaction network. Nat Biotechnol, 23(8):951-959. DS_507 Bioverse McDermott, J. et al. (2005). Functional annotation from predicted protein interaction networks. Bioinformatics, 21(15):3217-3226. DS_509 zTrap Gene and enhancer trapping in zebrafish DS_510 HMMTOP HMMTOP 2.1 - prediction of transmembrane helices and topology of proteins. Written by Gabor E. Tusnady DS_511 PHDhtm PHDhtm 2.0 - neural-network-based transmembrane predictor. Written by Burkhard Rost DS_513 toppred Toppred 1.0 - transmembrane topology predictor. Written by Eric Deveaud and Katja Schuerer, based on an algorithm by Gunnar von Heijne. DS_517 PHDsec PHDsec 2.0 - neural-network-based secondary structure predictor. Written by Burkhard Rost. DS_518 PHDacc PHDacc 2.0 - neural-network-based solvent accessibility predictor. Written by Burkhard Rost. DS_524 ECARUCA Registered ECARUCA abberations smaller than 30Mb DS_525 Phosida Phosida - Phosphorylation Site Database DS_526 3did Stein et al. (2005). 3did: interacting protein domains of known three-dimensional structure. Nucleic Acids Res, 33(Database issue):D413–D417. DS_527 interdom Ng et al. (2003). Integrative approach for computationally inferring protein domain interactions. Bioinformatics, 19(8):923–929. DS_528 ldsc Lee et al. (2006). An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics, 7:269. DS_529 ldsc-core Lee et al. (2006). An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics, 7:269. DS_530 apmm1 Wang et al. (2007). Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinformactics, 8(1):391 DS_531 apmm2 Wang et al. (2007). Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC Bioinformactics, 8(1):391 DS_532 llz Liu et al. (2005). Inferring protein-protein interactions through high-throughput interaction data from diverse organisms. Bioinformatics, 21(15):3279–3285. DS_533 dima-dpea Pagel et al. (2008). DIMA 2.0–predicted and known domain interactions. Nucleic Acids Res, 36, D651–D655. DS_534 dima-string Pagel et al. (2008). DIMA 2.0–predicted and known domain interactions. Nucleic Acids Res, 36, D651–D655. DS_535 dima-dprof Pagel et al. (2008). DIMA 2.0–predicted and known domain interactions. Nucleic Acids Res, 36, D651–D655. DS_536 dpea Riley et al. (2005). Inferring protein domain interactions from databases of interacting proteins. Genome Biol, 6(10):R89. DS_537 lp Guimaraes. et al. (2006). Predicting domain-domain interactions using a parsimony approach. Genome Biol, 7(11):R104. DS_538 RDFF Chen et al. (2005). Prediction of protein-protein interactions using random decision forest framework. Bioinformatics, 21(24):4394-400. DS_539 rcdp50 Jothi et al. (2006). Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions. J Mol Biol, 362(4):861-75. DS_540 tw Wuchty et al. (2006). Topology and weights in a protein domain interaction network-a novel way to predict protein interactions. BMC Genomcis, 7:122. DS_541 FunSimMat 2.1 Schlicker and Albrecht. (2008). FunSimMat: a comprehensive functional similarity database. Nucleic Acids Res, 36, D434–D439. DS_542 Domain support Protein interactions that are supported by underlying domain interactions as reported in iPfam. DS_544 merops merops DS_546 UCSC Gencode UCSC Gencode related tracks DS_548 novelloci 327 novel gene fragments provided by Mark Diekhans DS_549 Gene Expression Atlas European Bioinformatics Institute (EMBL-EBI) Gene Expression Atlas. The Gene Expression Atlas is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. DS_550 otter manual annotations A DAS source that provides access to the manual annotation data inside the Otter database in NCBI36 coordinates. DS_553 translated otter manual annotations A DAS source that provides the translations of the manual annotation data inside the Otter database. DS_557 ASTD human exons ASTD exon features grouped into transcripts, offered on human chromosome co-ordinates. DS_558 ASTD mouse exons ASTD exon features grouped into transcripts, offered on mouse chromosome co-ordinates. DS_559 ASTD rat exons ASTD exon features grouped into transcripts, offered on rat chromosome co-ordinates. DS_560 ASTD human SNPs ASTD SNP features, offered on human chromosome co-ordinates. DS_561 ASTD mouse SNPs ASTD SNP features, offered on mouse chromosome co-ordinates. DS_562 ASTD rat SNPs ASTD SNP features, offered on rat chromosome co-ordinates. DS_564 PInS Bordner and Gorin (2008). Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. BMC Bioinformatics, 9:234. DS_566 GRC region human genome NCBI36 Region reported to the Genome Reference Consortium NCBI36 DS_567 Human miRNAs A DAS source that provides access to the annotation data of primary transcripts of human miRNAs DS_568 Mouse miRNAs A DAS source that provides access to the annotation data of primary transcripts of mouse miRNAs DS_569 Rat miRNAs A DAS source that provides access to the annotation data of primary transcripts of rat miRNAs DS_570 hydra_ptg_p53_p19_M37 hydra_ptg_p53_p19_M37 mutations DS_571 CONGO de novo protein-coding exon predictions based on evolutionary signatures in 18 mammalian genomes (preliminary data, not for use in production pipelines) DS_572 JAX Mouse Data Mouse Genome Informatics data DS_579 Consensus Pseudogenes Pseudogenes where both Yales PseudoPipe and UCSCs RetroFinder algorithms agree. DS_580 otter manual annotations transcript sequences A DAS source that provides the transcript sequences of the manual annotation data from the Otter database. DS_581 SWISS-MODEL Repository SWISS-MODEL Repository DS_582 GNF Tissue Atlas Rat Tissue Expression data from the Genomics Institute of the Novartis Research Foundation. DS_583 GAD Genetic Association Database (diseases) DS_585 eQTL Sanger Expression Quantitative Trait Loci from the Sanger Institute DS_586 MeDIP-chip B-cells DNA methylation landscape for B-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_587 MeDIP-chip CD4 T-cells DNA methylation landscape for CD4 T-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_588 MeDIP-chip CD8 T-cells DNA methylation landscape for CD8 T-cells, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_589 MeDIP-chip Cervix DNA methylation landscape for Cervix, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_590 MeDIP-chip Colon DNA methylation landscape for Colon, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_591 MeDIP-chip GM06990 DNA methylation landscape for GM06990, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_592 MeDIP-chip Liver DNA methylation landscape for Liver, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_593 MeDIP-chip Lung DNA methylation landscape for Lung, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_594 MeDIP-chip Pancreas DNA methylation landscape for Pancreas, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_595 MeDIP-chip Placenta DNA methylation landscape for Placenta, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_596 MeDIP-chip Prostate DNA methylation landscape for Prostate, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_597 MeDIP-chip Rectum DNA methylation landscape for Rectum, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_598 MeDIP-chip Skeletal Muscle DNA methylation landscape for Skeletal Muscle, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_599 MeDIP-chip Sperm DNA methylation landscape for Sperm, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_600 MeDIP-chip Uterus DNA methylation landscape for Uterus, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_601 MeDIP-chip Whole Blood DNA methylation landscape for Whole Blood, assayed using methyl DNA immunoprecipitation (MeDIP), a Nimblegen oligonucleotide array and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_634 BM_hydrophobicity A hydrophobicity plot using the Black-Mould algorithm (Black, S.D. and Mould, D.R. 1991. Anal. Biochem. 193, 72-82) DS_635 KD_hydrophobicity A hydrophobicity plot using the Kyte-Doolittle algorithm (Kyte, J, Doolittle, RF. 1982. J Mol Biol 157:105-132). DS_667 hs36_clone Cloneset information from a NCBI36 assembly based Ensembl DS_668 8k_dkfz BAC array provided from Bernhard Radlwimmer and Peter Lichter from the DKFZ, Heidelberg, Germany (Anna Obenauf ticket 28160) DS_669 affy100k Affymetrix 100k (NCBI36) DS_670 affy10k Affymetrix 10k (NCBI36) DS_671 affy250_nsp affy250_nsp DS_672 affy500k Affymetrix 500k (NCBI36) DS_674 agilent_105a Agilent Human Genome CGH Microarray 105A (NCBI36) DS_675 agilent_human244 agilent_human244 DS_676 agilent_human44B agilent_human44B DS_678 agilent_human44A agilent_human44A DS_679 agilent_human185 agilent_human185 DS_683 BG_cytochip_v1_1 Bluegnome DS_684 BG_cytochip_v2_0 Bluegnome Provided by BlueGnome contact, David Chrimes - ticket 45502 Thu Sep 27 2007 DS_686 Eichler_36 Eichler cloneset( Oxford sent by Regina Regan (15/05/07)) mapped to NCBI 36 DS_692 ngrl_agilent Oligo array based on the Agilent 44b cloneset specific to the Wessex group (from Shuwen.Huang@salisbury) DS_693 nimblegen_hg18_wg Nimblegen Whole Genome (NCBI36) DS_694 spectral36 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_697 ens_36_30k WTSI TPA (NCBI36 based on file:HuTP_IMF_NCBI36_02Feb07.cfg ) DS_698 ens_36_omimg OMIM morbidmap data mapped to NCBI36 assembly locations DS_699 ens_36_omim_genes OMIM genes mapped to NCBI 36 DS_700 hgnc36 HGNC mappings Mapping data from http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/gdlw.plHGNC HUGO DS_703 WGTP_regions_36 WGTP regions (redon et al) mapped to NCBI 36 DS_704 Cosmic_Protein_Mutation Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_708 Integr8 mRNA The Integr8 mRNA data source describes the coverage of protein sequences from the non-redundant sets available through Integr8 for each complete proteome by experimentally determined mRNA sequence. DS_709 Rfam Rfam DS_710 Community Annotation Annotations for regions in the zebrafish assembly Zv8 as reported by the community DS_717 CytoChip v3 CytoChip version 3 is a BAC based microarray designed for the investigation of genomic copy number imbalance associated with constitutional cytogenetic disorders. Please contact info@cambridgebluegnome.com for further information or with any questions. DS_719 NIDB Rat CNVs Rat Copy Number Variations, supplied by the Netherlands Institute for Developmental Biology. DS_721 MeDIP-seq Sperm DNA methylation landscape for Sperm, assayed using methyl DNA immunoprecipitation (MeDIP), Illumina Genome Analyzer sequencing and Bayesian Tool for Methylation Analysis (Batman). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_722 EMMA European Mouse Mutant Archive (EMMA) DS_723 CHORI29 clones CHORI-29 NOD BAC Library, mapped to the NCBIM37 mouse assembly. The NOD/ShiLtJ mouse BAC library end-sequences have been mapped to the NCBIM37 mouse assembly using SSAHA alignment of the reads. DS_724 DIL NOD clones DIL NOD BAC Library, mapped to the NCBIM37 mouse assembly. The NOD/MrkTac mouse BAC library end-sequences have been mapped to the NCBIM37 mouse assembly using SSAHA alignment of the reads. DS_761 Ancora: Human-Zebrafish HCNEs Human non-exonic genomic regions conserved in the zebrafish (Danio rerio) genome. Minimum 70% identity over 50 alignment columns. More sources are available at http://ancora.genereg.net/das DS_763 VectorBase Expression Simple summaries of microarray-based gene expression from VectorBase DS_764 Exome Full Set Full coverage exome coordinates set DS_765 ens_m37_129AB22 129S7/AB2.2 Clones DS_766 GO literature Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB) generated from literature DS_767 disease literature Associated diseases for proteins in the UniProt Knowledgebase (UniProtKB) generated from literature DS_769 Bgee Bgee is a database to retrieve and compare gene expression patterns between animal species. DS_770 Prosite Full Alignments Retrieve the full sequence alignments for a PROSITE entry DS_771 EMAGE Mouse Embryo Spatial-Temporal In-Situ Gene Expression Resource DS_772 Vega genes Mapping of Vega genes to Ensembl DS_773 Vega genes Mapping of Vega genes to Ensembl DS_774 GRC region for Mouse assembly NCBIM_37 Region reported to the Genome Reference Consortium DS_775 GRC region NCBI_37 Region reported to the Genome Reference Consortium GRCh37 DS_817 Prosite Features (matches) The Prosite Feature DAS service provides features (Prosite matches, including level -1 not shown in UniProtKB. n.b. prosite rule derived sub-features are not shown. n.b. to get all features of a UniProtKB entry use the UniProtKB DAS service), sequence and type capabilities. DS_818 Zv_8 ZF-MODELS CLGY_Enhancer_Detection A DAS source that provides the insertions from the ZF-MODELS enhancer detection mutagenesis mapped to Zv_8 DS_819 Gorilla_gorilla.VEGA-clone.transcript Annotation source (returns clones) for Gorilla_gorilla transcript DS_820 Gorilla_gorilla.VEGA-clone.translation Annotation source (returns clones) for Gorilla_gorilla translation DS_821 Macropus_eugenii.VEGA-clone.transcript Annotation source (returns clones) for Macropus_eugenii transcript DS_822 Macropus_eugenii.VEGA-clone.translation Annotation source (returns clones) for Macropus_eugenii translation DS_823 IntOGen IntOGen is a resource that integrates multidimensional OncoGenomics Data for the identification of genes involved in development of different cancer types. DS_824 Ensembl genes Mapping of Ensembl genes to Vega DS_825 MGP_129P2_SNPs Mouse Genomes Project coding SNPs for strain 129P2; non-synonymous SNPs are in yellow, synonymous are in green. DS_826 MGP_129S1_SvImJ_SNPs Mouse Genomes Project coding SNPs for strain 129S1/SvImJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_827 MGP_A_J_SNPs Mouse Genomes Project coding SNPs for strain A/J; non-synonymous SNPs are in yellow, synonymous are in green. DS_828 MGP_AKR_J_SNPs Mouse Genomes Project coding SNPs for strain AKR/J; non-synonymous SNPs are in yellow, synonymous are in green. DS_829 MGP_BALB_cJ_SNPs Mouse Genomes Project coding SNPs for strain BALB/cJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_830 MGP_C3H_HeJ_SNPs Mouse Genomes Project coding SNPs for strain C3H/HeJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_831 MGP_C57BL_6NJ_SNPs Mouse Genomes Project coding SNPs for strain C57BL/6NJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_832 MGP_CAST_EiJ_SNPs Mouse Genomes Project coding SNPs for strain CAST/EiJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_833 MGP_CBA_J_SNPs Mouse Genomes Project coding SNPs for strain CBA/J; non-synonymous SNPs are in yellow, synonymous are in green. DS_834 MGP_DBA_2J_SNPs Mouse Genomes Project coding SNPs for strain DBA/2J; non-synonymous SNPs are in yellow, synonymous are in green. DS_835 MGP_LP_J_SNPs Mouse Genomes Project coding SNPs for strain LP/J; non-synonymous SNPs are in yellow, synonymous are in green. DS_836 MGP_NOD_ShiLtJ_SNPs Mouse Genomes Project coding SNPs for strain NOD/ShiLtJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_837 MGP_NZO_HiLtJ_SNPs Mouse Genomes Project coding SNPs for strain NZO/HiLtJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_838 MGP_PWK_PhJ_SNPs Mouse Genomes Project coding SNPs for strain PWK/PhJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_839 MGP_Spretus_EiJ_SNPs Mouse Genomes Project coding SNPs for strain Spretus/EiJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_840 MGP_WSB_EiJ_SNPs Mouse Genomes Project coding SNPs for strain WSB/EiJ; non-synonymous SNPs are in yellow, synonymous are in green. DS_857 RNASeq An. gambiae (Gibbons et al.) This DAS source is the result of the alignments of Solexa reads from a next-generation sequencing study of the transcriptome by Gibbons and colleagues (doi:10.1093/molbev/msp188) focusing on Anopheles and Aedes. This DAS source returns the density of aligned reads per base. DS_858 RNASeq Ae. aegypti (Gibbons et al.) This DAS source is the result of the alignments of Solexa reads from a next-generation sequencing study of the transcriptome by Gibbons and colleagues (doi:10.1093/molbev/msp188) focusing on Anopheles and Aedes. This DAS source returns the density of aligned reads per base. DS_859 FireDB Functionally important residues from proteins with known structure DS_860 pdbchainfeatures Provides various third party annotations that have been computed for PDB chains. DS_861 pdb_uniprot_mapping Provides a DAS source that is serving the alignment between UniProtKB and PDB, derived from the SIFTS mappings. DS_863 go_hsa/bioinfo.cipf null DS_864 SNPedia DAS source mirroring data from SNPedia. SNPedia is a wiki investigating human genetics. We share information about the effects of variations in DNA, citing peer-reviewed scientific publications. It is used by Promethease to analyze and help explain your DNA. DS_865 Cosmic Mutations in COLO-829 All genomic mutations in cellline COLO-829 from Cosmic DS_866 cbs_sort The combined result af the signalp, secretomep, targetp, netnes & lipop server for the given id DS_867 cbs_total The combined result of all of CBS DAS servers on the requested id DS_868 netacet NetAcet 1.0 server predicts substrates of N-acetyltransferase A (NatA) on yeast. DS_869 netnglyc The NetNglyc server predicts N-Glycosylation sites in human protein DS_870 netoglyc The NetOglyc server produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian proteins DS_871 targetp TargetP predicts the subcellular location of eukaryotic proteins DS_872 tmhmm Prediction of transmembrane helices in proteins DS_873 ens_m37_bacmap BAC Clones (RP23/24 libraries) DAS Source For M37 C57BL/6J Mouse Assembly: End read sequences have been mapped to the M37 Mouse assembly using SSAHA. Clones positioned by appropriate read end pairs are indictated by black rectangles. Fingerprinting maps allow the positioning of extra clones (using map2gp). These are indicated by gold rectangles with black outlines. These may be associated (depicted with horizontal line) with single SSAHA mapped read ends (which are depicted as narrower black rectangles). DS_876 Test 1.6 sources Test for DAS 1.6 sources DS_877 Cosmic Mutations in NCI-H209 All genomic mutations in cellline NCI-H209 from Cosmic DS_918 Gasterosteus aculeatus 59_1l (all transcripts) SUPERFAMILY domain annotation for Gasterosteus aculeatus 59_1l (all transcripts). DS_919 Gallus gallus 59_2o (all transcripts) SUPERFAMILY domain annotation for Gallus gallus 59_2o (all transcripts). DS_920 Macaca mulatta 59_10n (all transcripts) SUPERFAMILY domain annotation for Macaca mulatta 59_10n (all transcripts). DS_921 Pongo pygmaeus 59_1e (all transcripts) SUPERFAMILY domain annotation for Pongo pygmaeus 59_1e (all transcripts). DS_922 Loxodonta africana 59_3b (all transcripts) SUPERFAMILY domain annotation for Loxodonta africana 59_3b (all transcripts). DS_923 Dasypus novemcinctus 59_2c (all transcripts) SUPERFAMILY domain annotation for Dasypus novemcinctus 59_2c (all transcripts). DS_924 Tursiops truncatus 59_1e (all transcripts) SUPERFAMILY domain annotation for Tursiops truncatus 59_1e (all transcripts). DS_925 Sus scrofa 59_9c (all transcripts) SUPERFAMILY domain annotation for Sus scrofa 59_9c (all transcripts). DS_926 Ornithorhynchus anatinus 59_1m (all transcripts) SUPERFAMILY domain annotation for Ornithorhynchus anatinus 59_1m (all transcripts). DS_927 Monodelphis domestica 59_5k (all transcripts) SUPERFAMILY domain annotation for Monodelphis domestica 59_5k (all transcripts). DS_928 Aedes aegypti 55 (all transcripts) SUPERFAMILY domain annotation for Aedes aegypti 55 (all transcripts). DS_929 Ochotona princeps 59_1e (all transcripts) SUPERFAMILY domain annotation for Ochotona princeps 59_1e (all transcripts). DS_930 Drosophila melanogaster 59_525a (all transcripts) SUPERFAMILY domain annotation for Drosophila melanogaster 59_525a (all transcripts). DS_931 Echinops telfairi 59_1i (all transcripts) SUPERFAMILY domain annotation for Echinops telfairi 59_1i (all transcripts). DS_932 Erinaceus europaeus 59_1g (all transcripts) SUPERFAMILY domain annotation for Erinaceus europaeus 59_1g (all transcripts). DS_933 Tetraodon nigroviridis 59_8d (all transcripts) SUPERFAMILY domain annotation for Tetraodon nigroviridis 59_8d (all transcripts). DS_934 Myotis lucifugus 59_1i (all transcripts) SUPERFAMILY domain annotation for Myotis lucifugus 59_1i (all transcripts). DS_935 Tupaia belangeri 59_1h (all transcripts) SUPERFAMILY domain annotation for Tupaia belangeri 59_1h (all transcripts). DS_936 Dipodomys ordii 59_1e (all transcripts) SUPERFAMILY domain annotation for Dipodomys ordii 59_1e (all transcripts). DS_937 Tarsius syrichta 59_1e (all transcripts) SUPERFAMILY domain annotation for Tarsius syrichta 59_1e (all transcripts). DS_938 Equus caballus 59_2f (all transcripts) SUPERFAMILY domain annotation for Equus caballus 59_2f (all transcripts). DS_939 Felis catus 59_1h (all transcripts) SUPERFAMILY domain annotation for Felis catus 59_1h (all transcripts). DS_940 Gorilla gorilla 59_3b (all transcripts) SUPERFAMILY domain annotation for Gorilla gorilla 59_3b (all transcripts). DS_941 Anopheles gambiae 49_3j (all transcripts) SUPERFAMILY domain annotation for Anopheles gambiae 49_3j (all transcripts). DS_942 Pteropus vampyrus 59_1e (all transcripts) SUPERFAMILY domain annotation for Pteropus vampyrus 59_1e (all transcripts). DS_943 Saccharomyces cerevisiae 59_2a (all transcripts) SUPERFAMILY domain annotation for Saccharomyces cerevisiae 59_2a (all transcripts). DS_944 Microcebus murinus 59_1d (all transcripts) SUPERFAMILY domain annotation for Microcebus murinus 59_1d (all transcripts). DS_945 Mus musculus 59 (all transcripts) SUPERFAMILY domain annotation for Mus musculus 59 (all transcripts). DS_946 Procavia capensis 59_1e (all transcripts) SUPERFAMILY domain annotation for Procavia capensis 59_1e (all transcripts). DS_947 Oryctolagus cuniculus 59_2b (all transcripts) SUPERFAMILY domain annotation for Oryctolagus cuniculus 59_2b (all transcripts). DS_948 Oryzias latipes 59_1k (all transcripts) SUPERFAMILY domain annotation for Oryzias latipes 59_1k (all transcripts). DS_949 Rattus norvegicus 59_34a (all transcripts) SUPERFAMILY domain annotation for Rattus norvegicus 59_34a (all transcripts). DS_950 Otolemur garnettii 59_1g (all transcripts) SUPERFAMILY domain annotation for Otolemur garnettii 59_1g (all transcripts). DS_951 Ciona intestinalis 59_2o (all transcripts) SUPERFAMILY domain annotation for Ciona intestinalis 59_2o (all transcripts). DS_952 Bos taurus 59_4h (all transcripts) SUPERFAMILY domain annotation for Bos taurus 59_4h (all transcripts). DS_953 Macropus eugenii 59_1b (all transcripts) SUPERFAMILY domain annotation for Macropus eugenii 59_1b (all transcripts). DS_954 Sorex araneus 59_1g (all transcripts) SUPERFAMILY domain annotation for Sorex araneus 59_1g (all transcripts). DS_955 Pan troglodytes 59_21n (all transcripts) SUPERFAMILY domain annotation for Pan troglodytes 59_21n (all transcripts). DS_956 Danio rerio 59_8e (all transcripts) SUPERFAMILY domain annotation for Danio rerio 59_8e (all transcripts). DS_957 Ciona savignyi 59_2j (all transcripts) SUPERFAMILY domain annotation for Ciona savignyi 59_2j (all transcripts). DS_958 Spermophilus tridecemlineatus 59_1i (all transcrip SUPERFAMILY domain annotation for Spermophilus tridecemlineatus 59_1i (all transcripts). DS_960 Callithrix jacchus 59_321a (all transcripts) SUPERFAMILY domain annotation for Callithrix jacchus 59_321a (all transcripts). DS_961 Cavia porcellus 59_3c (all transcripts) SUPERFAMILY domain annotation for Cavia porcellus 59_3c (all transcripts). DS_962 Canis familiaris 59_2o (all transcripts) SUPERFAMILY domain annotation for Canis familiaris 59_2o (all transcripts). DS_963 Caenorhabditis elegans 59_210a (all transcripts) SUPERFAMILY domain annotation for Caenorhabditis elegans 59_210a (all transcripts). DS_964 Vicugna pacos 59_1e (all transcripts) SUPERFAMILY domain annotation for Vicugna pacos 59_1e (all transcripts). DS_965 Xenopus tropicalis 59_41p (all transcripts) SUPERFAMILY domain annotation for Xenopus tropicalis 59_41p (all transcripts). DS_966 Homo sapiens 59_37d (all transcripts) SUPERFAMILY domain annotation for Homo sapiens 59_37d (all transcripts). DS_967 Anolis carolinensis 59_1c (all transcripts) SUPERFAMILY domain annotation for Anolis carolinensis 59_1c (all transcripts). DS_1028 InterPro-Matches-Overview Shows the maximum extent of the matches from all signatures that are integrated into a single InterPro entry against UniProtKB protein sequences (i.e. if an InterPro entry contains 2 signatures, A and B, and both of these match a protein, A between residue 3 and 125 and B between residue 5 and 127, the overview supermatch of these signatures is between 3 and 127). DS_1029 InterPro-UniParc-matches Contains all InterPro member database signature matches to all UniParc protein sequences. DS_1254 PeptideAtlas Mouse Information exported from PeptideAtlas Mouse build. DS_1255 PeptideAtlas Human Information exported from PeptideAtlas Human build. DS_1256 PeptideAtlas Drosophila Peptides information exported from PeptideAtlas Drosophila build. DS_1257 PeptideAtlas Yeast Peptides from the PeptideAtlas Yeast build DS_1258 PeptideAtlas Yeast MRM Peptides from the PeptideAtlas Yeast MRM PeptideAtlas build DS_1259 PeptideAtlas Human Plasma Peptides from the PeptideAtlas Human Plasma build DS_1260 PeptideAtlas Human Urine Peptides from the PeptideAtlas Human Urine build DS_1261 PeptideAtlas Mouse Plasma Peptides from the PeptideAtlas Mouse Plasma build DS_1262 Meleagris gallopavo 57_2 (all transcripts) SUPERFAMILY domain annotation for Meleagris gallopavo 57_2 (all transcripts). DS_1263 Taeniopygia guttata 59_1e (all transcripts) SUPERFAMILY domain annotation for Taeniopygia guttata 59_1e (all transcripts). DS_1289 PhenCode PhenCode connects human phenotype and clinical data in various locus-specific mutation databases (LSDBs) with data on genome sequences, evolutionary history, and function in genome browsers. DS_1290 ArkDB Chick Markers ePCR mapping of Chicken Markers found at www.thearkdb.org.uk on to the WASHUC_2 assembly DS_1291 ArkBD Pig Markers ePCR mappings of pig markers found at www.thearkdb.org.uk on to the Sscrofa9 Pig genome assembly DS_1292 ArkDB Cow Markers ePCR mappings of cow markers found at www.thearkdb.org.uk on to the cow btau4.0 genome assembly DS_1293 ArkDB Turkey Markers ePCR mappings of turkey markers found at www.thearkdb.org.uk on to the turkey UMD2 genome assembly DS_1294 Anopheles albimanus mRNAseq Martinez-Barnetche Jesus Martinez-Barnetche and colleagues (insert ref here) sequenced the transcriptome of the Anopheles albimanus adult female, an important malaria vector in Latin America. By combining Sanger, 454 and Illumina sequences from cDNA libraries derived from the midgut, cuticular fat body, dorsal vessel, salivary gland and from whole adult females, we generated a single, high-quality assembly containing 16,669 transcripts, 92% of which mapped to the An. darlingi genome. More than half of the transcripts had a match to proteins in other insect vectors and had an InterPro annotation. DS_1295 Mass spec. proteomics (JHU II) We carried out a comprehensive mass spectrometry analysis of midgut, salivary gland and ovary of adult female mosquito using LTQ Orbitrap XL ETD high resolution mass spectrometer. We analyzed the mass spectrometry derived data in Mascot search algorithm using six frame translation of genome and protein database of Anopheles, Aedes and Drosophila. We identified novel genes, corrected and validated gene annotations of Anopheles gambiae. DS_1296 "NextGen" Expression Interim handling of DS_1306 Canis_familiaris.VEGA.prediction_transcript Annotation source for Canis_familiaris prediction_transcript DS_1307 Canis_familiaris.VEGA.reference Canis_familiaris Reference server based on VEGA assembly. Contains 1 top level entries. DS_1308 Canis_familiaris.VEGA.transcript Annotation source for Canis_familiaris transcript DS_1309 Canis_familiaris.VEGA.translation Annotation source for Canis_familiaris translation DS_1317 Gorilla_gorilla.VEGA.prediction_transcript Annotation source for Gorilla_gorilla prediction_transcript DS_1318 Gorilla_gorilla.VEGA.reference Gorilla_gorilla Reference server based on VEGA assembly. Contains 2 top level entries. DS_1319 Gorilla_gorilla.VEGA.transcript Annotation source for Gorilla_gorilla transcript DS_1320 Gorilla_gorilla.VEGA.translation Annotation source for Gorilla_gorilla translation DS_1328 Macropus_eugenii.VEGA.prediction_transcript Annotation source for Macropus_eugenii prediction_transcript DS_1329 Macropus_eugenii.VEGA.reference Macropus_eugenii Reference server based on VEGA assembly. Contains 1 top level entries. DS_1330 Macropus_eugenii.VEGA.transcript Annotation source for Macropus_eugenii transcript DS_1331 Macropus_eugenii.VEGA.translation Annotation source for Macropus_eugenii translation DS_1339 Sus_scrofa.VEGA.karyotype Annotation source for Sus_scrofa karyotype DS_1340 Sus_scrofa.VEGA.prediction_transcript Annotation source for Sus_scrofa prediction_transcript DS_1341 Sus_scrofa.VEGA.reference Sus_scrofa Reference server based on VEGA assembly. Contains 3 top level entries. DS_1342 Sus_scrofa.VEGA.transcript Annotation source for Sus_scrofa transcript DS_1343 Sus_scrofa.VEGA.translation Annotation source for Sus_scrofa translation DS_1397 hg19 Human Feb. 2009 (GRCh37/hg19) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1398 hg18 Human Mar. 2006 (NCBI36/hg18) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1399 hg17 Human May 2004 (NCBI35/hg17) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1400 hg16 Human July 2003 (NCBI34/hg16) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1401 mm9 Mouse July 2007 (NCBI37/mm9) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1402 mm8 Mouse Feb. 2006 (NCBI36/mm8) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1403 mm7 Mouse Aug. 2005 (NCBI35/mm7) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1404 cavPor3 Guinea pig Feb. 2008 (Broad/cavPor3) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1405 equCab2 Horse Sep. 2007 (Broad/equCab2) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1406 susScr2 Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1407 loxAfr3 Elephant Jul. 2009 (Broad/loxAfr3) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1408 anoCar1 Lizard Feb. 2007 (Broad/anoCar1) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1409 oryLat2 Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1410 dm3 D. melanogaster Apr. 2006 (BDGP R5/dm3) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1411 dm2 D. melanogaster Apr. 2004 (BDGP R4/dm2) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1412 dm1 D. melanogaster Jan. 2003 (BDGP R3/dm1) Genome at UCSC Note: this source should be used with a type filter on the end of a features request e.g. &type=bacEndPairs&type=ensGene DS_1413 60k_SNP 60K SNPs project. SNPs mapped with flanking sequence onto the Pig genome ver 9. Only unique mapping are displayed. DS_1415 cnio_massspec Human mass-spec peptides mapped to Gencode 3c by M.Tress et al., CNIO DS_1416 Cosmic Transcripts Transcripts from Cosmic mapped to Human GRCh 37 DS_1417 Cosmic Mutations Mutations from Cosmic mapped to Human GRCh 37 DS_1418 Cosmic Mutations in COLO-829 All genomic mutations in cellline COLO-829 from Cosmic DS_1419 Cosmic Mutations in NCI-H209 All genomic mutations in cellline NCI-H209 from Cosmic DS_1420 uniprot2probes Annotation source with microarray probes mapping uniprot sequences. DS_1436 Pride DAS 1.6 The PRIDE database is a centralized, public data repository for proteomics data. It has been developed to provide the proteomics community with a public repository for protein and peptide identifications together with the evidence supporting these identifications. In addition to identifications, PRIDE is able to capture details of post-translational modifications coordinated relative to the peptides in which they have been found. DS_1523 hsa_54_36p Human genome annotation from Ensembl 54 (via biojava-ensembl) DS_1524 hsa_59_37d Human genome annotation from Ensembl 59 via biojava-ensembl (gene structures are GENCODE 4) DS_1525 medipseq_reads MeDIP-seq read mappings from Nature Biotech. 26:779-785 DS_1526 uniprot_exon_snp Ensembl exon boundary and SNP data projected on UniProt sequence. Based on the COMPARA ENSP-UniProt mapping. DS_1527 demo_histo shows score from signal peptide prediction DS_1528 demo_gradient shows score from signal peptide prediction DS_1529 demo_lineplot shows score from signal peptide prediction DS_1530 demo_nostyle shows score from signal peptide prediction DS_1531 yale_pseudogenes pseudogenes coming from Philip at Yale. DS_1532 DECIPHER_HGNC HGNC mappings Mapping data from http://www.gene.ucl.ac.uk/cgi-bin/nomenclature/gdlw.pl HGNC HUGO DS_1533 Human CCDS Public Note CCDS Public Note DS_1534 Mouse CCDS Public Note CCDS Public Note DS_1535 decipher DECIPHER V5.1 DS_1536 segdup_washu_36_collapsed segdup_washu_36_collapsed DS_1537 desmith DeSmith(http://projects.tcag.ca/variation/downloads/deSmith2007.txt) DS_1540 agilent_4x44 agilent_4x44 DS_1542 WGTP_loci_36 WGTP regions (redon et al) mapped to NCBI 36 DS_1544 ens5236ngenes ens5236ngenes DS_1552 x_chromosome_tiling_array X-chromosome Tiling array (Leuven: 22/10/07) DS_1553 xhd xhd DS_1554 xes xes DS_1555 s+vt s+vt DS_1556 sanger244kv2 sanger244kv2 DS_1557 toronto_poly_36 Database of Genetic Variations DAS Source For NCBI36 Human Assembly (hg18): The Database of Genomic Variants is a curated catalogue of large-scale variation in the human genome.The data displayed was obtained from their download site (which was last updated here on 31st July 2008). There are 59 Inversion, 6481 CopyNumber and 18 InversionBreakpoint features. DS_1558 iPfamInteraction iPfamLigInteraction das source offers the ligands interactions with the pfam domain. DS_1559 ens_36_segdup_washu ens_36_segdup_washu DS_1560 KO_designs Recombineering oligos for knockout designs (Sanger HTGT). DS_1561 KO_designs_cr Candidate regions for knockout designs (Sanger HTGT). DS_1562 custom_KO_designs Recombineering oligos for custom knockout designs (Sanger HTGT). DS_1563 KO_vectors Recombineering oligos for constructed knockout designs (Sanger HTGT). DS_1564 mouse_KOs Orthologous_mouse_KOs DS_1565 ikmc_products IKMC - Knockout Mutant Mouse Alleles DS_1566 team87_production_constructs Recombineering oligos for knockout designs (Sanger HTGT). DS_1572 ens_zfish7_morpholino ens_zfish7_morpholino DS_1573 Havana manual annotation (GRCh37) A DAS source that provides access to the manual annotation data inside the Otter database in GRCh37 coordinates. DS_1574 Havana Pig manual annotations A DAS source that provides access to the manual annotation data inside the Otter database for Pig. DS_1575 ChromatinSigs TSS predictions based on combined chromatin signatures (Jason Ernst, MIT) DS_1576 CCDS human Human transcripts part of the CCDS set DS_1577 CCDS mouse Murine transcripts part of the CCDS set DS_1578 ASPIC ASPIC alternative isoforms on NCBI 36 DS_1579 important GENCODE issues Loci and transcripts flagged in the AnnoTrack system for the attention of annotators DS_1580 peptides confirmed by mass spectrometrometry A DAS source that provides access to the automatic annotation data from mass spectrometry (translational evidence) DS_1584 KO_mouse_genes Knockout mouse genes DS_1585 homo_sapiens_KO_mouse_orthologues Knockout mouse orthologues for homo sapiens DS_1586 danio_rerio_KO_mouse_orthologues Knockout mouse orthologues for zebrafish DS_1587 constrained_regions Regions of constrained elements outside of current GENCODE annotation from TFBS, RNA-Seq, open chromatin and other RNA data (supplied by ENCODE comparative group). ENCODE usage restrictions apply. DS_1588 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1589 BacAbs predictions for organisms studied by the BacAbs project DS_1590 hydroph hydroph DS_1591 KD_hydroph KD_hydroph DS_1592 BM_hydroph BM_hydroph DS_1593 metatm metatm DS_1594 MGI Representative Transcripts Mouse_37; MGI_Representative_Transcripts track; MGI Representative Transcripts; For all MGI gene and transcript tracks (i.e. not including ENSEMBL and NCBI gene models and the VEGA annotations) coordinates in the build 36 assembly were either downloaded from UCSC (mrnas, ests, refseq NM and NRs) or BLATted locally (tigr, DoTS, NIA, and refseq XM and XRs). Local BLAT results were filtered using pslReps -singleHit. These pools of coordinates were subsequently mined for relevant sequences based on various MGI database reports. Entries in the track are named using the GenBank sequence ID prepended to the MGI symbol. Each item in the track links to the corresponding MGI marker detail page. DS_1595 QTL Mouse_37; QTL track; QTL; Quantitative trait loci were mapped to the build 36 assembly based on the known location of the STS markers that define the peaks and flanks of the QTL. Each QTL entry in the track links to the corresponding MGI marker detail page. As most QTLs that have flank as well as peak data are far longer than the 1 Mbase GBrowse easily displays, the QTL track is also shown in a compressed form in the overview panel. DS_1596 Adipose_tissue Mouse_37; Adipose_tissue track; Adipose_tissue; Please see notes under MGI_Representative_Transcripts track for assembly and coordinate details. The MGI database report, MGI_PhenotypicAllele.rpt, was parsed for markers and alleles that are associated with transcripts (not including gene model transcripts) and the Top Level Mammalian Phenotype (MP) terms were captured. Note that these top level terms can be associated with a marker multiple times (i.e. via multiple alleles). A track for each of the top-level MP terms, were then created. Within each track, the intron-exon structure of the transcript representing that marker has been preserved in the display. Track entries are named with a catenation of seqID, marker symbol, and MP term. From the phenotypes tracks, each entry links to a page that summarizes the phenotypic/allele details. The Mammalian Phenotype Ontology can be browsed here. DS_1597 Behavior_neurological Mouse_37; Behavior_neurological track; Behavior_neurological; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1598 Cardiovascular_system Mouse_37; Cardiovascular_system track; Cardiovascular_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1599 Cellular Mouse_37; Cellular track; Cellular; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1600 Craniofacial Mouse_37; Craniofacial track; Craniofacial; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1601 Digestive_alimentary Mouse_37; Digestive_alimentary track; Digestive_alimentary; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1602 Embryogenesis Mouse_37; Embryogenesis track; Embryogenesis; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1603 Endocrine_exocrine_gland Mouse_37; Endocrine_exocrine_gland track; Endocrine_exocrine_gland; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1604 Growth_size Mouse_37; Growth_size track; Growth_size; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1605 Hearing_ear Mouse_37; Hearing_ear track; Hearing_ear; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1606 Hematopoietic_system Mouse_37; Hematopoietic_system track; Hematopoietic_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1607 Homeostasis_metabolism Mouse_37; Homeostasis_metabolism track; Homeostasis_metabolism; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1608 Immune_system Mouse_37; Immune_system track; Immune_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1609 Lethality-embryonic_perinatal Mouse_37; Lethality_embryonic_perinatal track; Lethality-embryonic_perinatal; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1610 Lethality-postnatal Mouse_37; Lethality_postnatal track; Lethality-postnatal; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1611 Life_span-post-weaning_aging Mouse_37; Life_span_post_weaning_aging track; Life_span-post-weaning_aging; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1612 Limbs_digits_tail Mouse_37; Limbs_digits_tail track; Limbs_digits_tail; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1613 Liver_biliary_system Mouse_37; Liver_biliary_system track; Liver_biliary_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1614 Muscle Mouse_37; Muscle track; Muscle; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1615 Nervous_system Mouse_37; Nervous_system track; Nervous_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1616 Pigmentation Mouse_37; Pigmentation track; Pigmentation; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1617 Renal_urinary_system Mouse_37; Renal_urinary_system track; Renal_urinary_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1618 Reproductive_system Mouse_37; Reproductive_system track; Reproductive_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1619 Respiratory_system Mouse_37; Respiratory_system track; Respiratory_system; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1620 Skeleton Mouse_37; Skeleton track; Skeleton; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1621 Skin_coat_nails Mouse_37; Skin_coat_nails track; Skin_coat_nails; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1622 Taste_olfaction Mouse_37; Taste_olfaction track; Taste_olfaction; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1623 Touch_vibrissae Mouse_37; Touch_vibrissae track; Touch_vibrissae; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1624 Tumorigenesis Mouse_37; Tumorigenesis track; Tumorigenesis; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1625 Vision_eye Mouse_37; Vision_eye track; Vision_eye; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1626 Normal_phenotype Mouse_37; Normal_phenotype track; Normal_phenotype; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1627 Other_phenotype Mouse_37; Other_phenotype track; Other_phenotype; Please see notes under Adipose_tissue track in phenotypes for phenotype details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1628 Alleles_induced Mouse_37; Alleles_induced track; Alleles_induced; Please see notes under Alleles_gene_trapped track in Alleles for allele details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1629 Alleles_spontaneous Mouse_37; Alleles_spontaneous track; Alleles_spontaneous; Please see notes under Alleles_gene_trapped track in Alleles for allele details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1630 Alleles_targeted Mouse_37; Alleles_targeted track; Alleles_targeted; Please see notes under Alleles_gene_trapped track in Alleles for allele details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1631 Alleles_transgenic Mouse_37; Alleles_transgenic track; Alleles_transgenic; Please see notes under Alleles_gene_trapped track in Alleles for allele details and notes under MGI_Representative_Transcripts track for assembly and coordinate details DS_1632 GeneTraps_per_Gene Mouse_37; GeneTraps_per_gene track; GeneTraps_per_Gene; Color-coded gene trap frequency track for MGI genes, indicating the number of gene trap insertions per gene. Only gene trap insertions that "trap" a gene (i.e., overlap the gene's coordinates in the correct transcriptional orientation) are counted. If gene model colored red there are >1000 gene traps associated with the gene, orange is 101 to 1000, green is 11 to 100, blue is 2 to 10, violet is just a single genetrap, and black is no gene traps associated with the gene. DS_1633 GeneTraps_RNA_tags Mouse_37; MGI_RNA_Gtraps track; GeneTraps_RNA_tags; Gene Trap sequence tags from GenBank dbGSS that have an RNA-based sequence tag method (5'-RACE or 3'-RACE). RNA-based gene trap sequence tags are derived from the exon adjacent to the insertion site. If the sequence tag method is 5'-RACE (blue), the insertion site is in the intron downstream from the most 3' exon represented in the sequence tag. If the sequence tag is 3'-RACE (green), the insertion site is in the intron upstream from the most 5' exon represented in the sequence tag. Gene trap mutagenesis requires that the vector inserts in the correct transcriptional orientation of the "trapped" gene. Sequence tags that overlap known genes in the opposite transcriptional orientation do not disrupt those genes from a gene trapping mechanism, and are not counted in the GeneTraps_per_Gene track. DS_1634 asd_gene [GeneView] AltSplice features on human and mouse genes. DS_1635 atd_gene [GeneView] AltTrans features on human and mouse genes. DS_1636 NASC (fei_0) Variants from the European Arabidopsis Stock Centre DS_1637 asd_snp_mouse [ContigView] SNPs on AltSplice mouse alternative splicing patterns. DS_1638 atd_mouse [ContigView] AltTrans mouse alternative transcript patterns. DS_1639 NASC (van_0) Variants from the European Arabidopsis Stock Centre DS_1640 NASC (c24) Variants from the European Arabidopsis Stock Centre DS_1641 NASC (bay_0) Variants from the European Arabidopsis Stock Centre DS_1642 asd_snp_human [ContigView] SNPs on AltSplice human alternative splicing patterns. DS_1643 NASC (tamm_2) Variants from the European Arabidopsis Stock Centre DS_1644 NASC (got_7) Variants from the European Arabidopsis Stock Centre DS_1645 asd_human [ContigView] AltSplice human alternative splicing patterns. DS_1646 NASC (tsu_1) Variants from the European Arabidopsis Stock Centre DS_1647 NASC (nfa_8) Variants from the European Arabidopsis Stock Centre DS_1648 JHU MS [Anopheles gambiae] MS data from Pandey lab, JHU DS_1649 atd_human [ContigView] AltTrans human alternative transcript patterns. DS_1650 Transposons [Anopheles gambiae] Transposons annotated on chromosome coordinates. DS_1651 NASC (lov_5) Variants from the European Arabidopsis Stock Centre DS_1652 NASC (bur_0) Variants from the European Arabidopsis Stock Centre DS_1653 NASC (br_0) Variants from the European Arabidopsis Stock Centre DS_1654 NASC (ler_1) Variants from the European Arabidopsis Stock Centre DS_1655 asd_mouse [ContigView] AltSplice mouse alternative splicing patterns. DS_1656 NASC (ts_1) Variants from the European Arabidopsis Stock Centre DS_1657 NASC (est_1) Variants from the European Arabidopsis Stock Centre DS_1658 NASC (rrs_7) Variants from the European Arabidopsis Stock Centre DS_1659 NASC (shakhdara) Variants from the European Arabidopsis Stock Centre DS_1660 NASC (bor_4) Variants from the European Arabidopsis Stock Centre DS_1661 NASC (rrs_10) Variants from the European Arabidopsis Stock Centre DS_1662 NASC (cvi_0) Variants from the European Arabidopsis Stock Centre DS_1663 citexplore_split The top citations for a PDB ID, Uniprot Accession or gene name, sourced from CiteXplore. DS_1664 Top Selective Sweep Regions DAS source providing coordinates of the regions with the z-scores amongst the smallest 5% of all regions identified by Selective Sweep Scan DS_1665 Catalog of Changes DAS source providing Neandertal alleles for positions of non-synonymous difference between human and chimpanzee DS_1666 Selective Sweep Error DAS source providing the standard error for corresponding z-scores from the Selective Sweep Scan DS_1667 Selective Sweep Z-scores DAS source providing z-scores from the Selective Sweep Scan DS_1668 PDBe Summary Basic summary data for PDB structures. DS_1669 phdsec phdsec DS_1670 toppred toppred DS_1671 phdacc phdacc DS_1672 signalp signalp DS_1673 phdhtm phdhtm DS_1674 phobius phobius DS_1675 hmmtop hmmtop DS_1948 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1949 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1950 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1951 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1952 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1953 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1954 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1955 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1956 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1957 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1958 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1959 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1960 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1961 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1962 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1963 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1964 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1965 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1966 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1967 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1968 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1969 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1970 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1971 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1972 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1973 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1974 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1975 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1976 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1977 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1978 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1979 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1980 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1981 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1982 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1983 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1984 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1985 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1986 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1987 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1988 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1989 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1990 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1991 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1992 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1993 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1994 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1995 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_1996 pubmed2ensembl www.pubmed2ensembl.org -- linking publications and genes DS_2057 IMGT DAS Sources Mus musculus IG and TR genes located using IMGT reference sequences. DS_2058 IKMC_Trapped_Alleles IKMC Trapped Alleles DS_2059 hs35_clone Cloneset information from a NCBI35 assembly based Ensembl DS_2060 spectral34 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2061 ens_36_imprinted_genes Imprinted genes (Otago website) mapped to NCBI 36 DS_2063 ens_m35_genetrap Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2064 ens_m36_genetrap GeneTrap DAS Source For M36 Mouse Assembly: GeneTrap sequence tags generated by the International Gene Trap Consortium and mapped to the NCBI m36 mouse assembly. DS_2065 ens3335genes Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2066 ens_ncbi_35_morbid Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2067 pigends_all_humanNCBI35 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2068 pigends_all_humanNCBI36 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2069 snp_Zv4 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2070 indel_Zv4 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2071 snp_Zv5 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2072 indel_Zv5 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2073 ens_36_exoseq_sts STS designed to amplify and sequence exons in the ExoSeq SNP detection program (NCBI36 coordinates). DS_2074 ens_35_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2075 ens_36_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2076 ens_m33_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2077 ens_rat34_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2078 ens_rat34_bacend Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2079 ens_35_toronto_dbgv Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2080 ens_35_genexref Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2081 ens_m33_genexref Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2082 ens_m33_nia_genes Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2083 ens_m33_mgi_pheno Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2084 ens_m34_129AB22 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2085 ens_m35_129AB22 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2086 ens_m36_129AB22 AB 2.2 Clones DAS Source For M36 Mouse Assembly: The end read sequences have been mapped to the M36 Mouse assembly using SSAHA. DS_2087 ens_m34_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2089 ens_m36_compugen Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2090 ens_m34_geneid Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2091 ens_m35_geneid Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2092 ens_m36_geneid geneid DAS Source For M36 Mouse Assembly: The geneid v1.2 gene predictions for the M36 Mouse assembly. DS_2093 ens_m34_sgp Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2094 ens_m35_sgp Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2095 ens_m36_sgp sgp DAS Source For M36 Mouse Assembly: The sgp gene predictions for the M36/ mm8 Mouse assembly. DS_2096 ens_m34_refseq Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2097 ens_m35_refseq Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2098 ens_m36_refseq NCBI RefSeq mappings to Mouse NCBIM36 C57BL/6J reference assembly DS_2099 ens_36_refseq NCBI RefSeq mappings to Human NCBI36 reference assembly DS_2100 ens_m34_nia_genes Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2101 ens_m35_nia_genes Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2102 ens_m36_nia_genes NIA Mouse Gene Index DS_2103 ens_m34_nod_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2104 ens_m35_nod_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2105 ens_m36_nod_clones NOD BAC Library DAS Source For M36 Mouse Assembly:The NOD/MrkTac Mouse BAC Library end sequences have been mapped to the M36 Mouse assembly using SSAHA. DS_2106 ens_m36_nodtiling NOD BAC MTP DAS Source For M36 Mouse Assembly: A subset of the NOD/MrkTac Mouse BAC Library, as mapped in the full DAS, representing a minimum tiling path (with 20K bp clone overlap). DS_2107 ens_m34_chori_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2108 ens_m35_chori_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2109 ens_m36_chori_clones CHORI-29 NOD BAC Library DAS Source For M36 Mouse Assembly: The CHORI-29 NOD Mouse BAC Library end sequences have been mapped to the M36 Mouse assembly using SSAHA. DS_2110 ens_m36_choritiling CHORI-29 NOD BAC MTP DAS Source For M36 Mouse Assembly: A subset of the CHORI-29 NOD Mouse BAC Library, as mapped in the full DAS, representing a minimum tiling path (with 20K bp clone overlap). DS_2111 ens_m35_c3h_bacs Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2112 ens_m36_c3h_bacs Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2113 ens_m34_micer Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2114 ens_m35_micer Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2115 ens_m36_micer MICER DAS Source For M36 Mouse Assembly: The http://www.sanger.ac.uk/PostGenomics/mousegenomics/ Mutagenic Insertion and Chromosome Engineering Resource (MICER) provides vectors for generating knockout mice, and for chromosome engineering. The end read sequences have been mapped to the M36 Mouse http://www.ncbi.nlm.nih.gov/genome/seq/NCBIContigInfo.html using http://www.sanger.ac.uk/Software/analysis/SSAHA/. The associated stylesheet suggest glyphs for the clones which match the colour and shape of those described in the paper Mutagenic insertion and chromosome engineering resource (MICER).Adams DJ, Biggs PJ, Cox T, Davies R, van der Weyden L, Jonkers J, Smith J, Plumb B, Taylor R, Nishijima I, Yu Y, Rogers J, Bradley A Nat Genet. 2004;36;867-71. PMID: 15235602 DS_2116 ens_m34_bac Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2117 ens_m34_bacmap Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2118 ens_m36_bacmap BAC Clones (RP23/24 libraries) DAS Source For M36 C57BL/6J Mouse Assembly: End read sequences have been mapped to the M36 Mouse assembly using SSAHA. Clones positioned by appropriate read end pairs are indictated by gold rectangles with black outlines. Fingerprinting maps allow the positioning of extra clones (using map2gp). These are indicated by gold rectangles without outlines. These may be associated (depicted with horizontal line) with single SSAHA mapped read ends (which are depicted as narrower black rectangles). DS_2119 ens_m34_msm Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2120 ens_m35_msm Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2121 ens_m36_msm MSM BAC Library DAS Source For M36 Mouse Assembly: The MSM Mouse BAC Library end sequences have been mapped to the M36 Mouse assembly using SSAHA. DS_2122 ens_m34_dots Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2123 ens_m34_mgc Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2124 ens_m35_mgc Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2125 ens_m36_mgc MGC DAS Source For M36 Mouse Assembly: Transcripts from full-length open reading frame (FL-ORF) clones provided by the Mammalian Gene Collection (MGC) mapped (by UCSC) to the M36 Mouse assembly. DS_2126 ens_m35_gnomon Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2127 ens_m36_gnomon NCBI Gnomon HMM predictions for Mouse NCBIM36 C57BL/6J reference assembly DS_2128 ens_36_gnomon NCBI Gnomon HMM predictions for Human NCBI36 reference assembly DS_2129 ens_35_hver Sanger Hver Array mapping to NCBI35 reference assembly DS_2130 ens_36_hver Sanger Hver Array mapping to NCBI36 reference assembly DS_2131 ens_35_horse Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2132 ens_35_cpg_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2133 ens_36_cpg_clones CpG clones created using a methylated region bias selection technique mapped to the NCBI36 human assembly DS_2134 ens_36_cpg_eponine CpG predicitons by Eponine on NCBI36 human assembly DS_2143 ens_m34_1Mb_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2144 ens_m34_0.5Mb_clones Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2145 ens_m36_1Mb_clones The C57BL/6J 1MB clone subset from the RP23/24 libraries. DS_2146 ens_m36_0.5Mb_clones The C57BL/6J 0.5MB clone subset from the RP23/24 libraries. DS_2147 ens_m37_1Mb_clones The C57BL/6J 1MB clone subset from the RP23/24 libraries. DS_2148 ens_m37_0.5Mb_clones The C57BL/6J 0.5MB clone subset from the RP23/24 libraries. DS_2150 ens_35_m2h Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2151 ens_35_m2h2 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2152 ens_35_m2d2 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2153 ens_35_m2m2 Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2154 ens_35_illumina Illumina probes mapped to NCBI35 Homo Sapiens assembly using SSAHA2 DS_2155 ens_36_illumina Illumina probes mapped to NCBI36 Homo Sapiens assembly using SSAHA2 DS_2156 ens_m34_illumina Illumina probes mapped to NCBIM34 Mus musculus assembly using SSAHA2 DS_2157 ens_m35_illumina Illumina probes mapped to NCBIM35 Mus musculus assembly using SSAHA2 DS_2158 ens_m36_illumina Illumina probes mapped to NCBIM36 Mus musculus assembly using SSAHA2 DS_2159 ens_m34_tilingpath_clones The C57BL/6J tiling path clone set from the RP23/24 libraries. DS_2160 ens_m35_tilingpath_clones The C57BL/6J tiling path clone set from the RP23/24 libraries. DS_2161 ens_m36_tilingpath_clones The C57BL/6J tiling path clone subset from the RP23/24 libraries. DS_2162 ens_m37_tilingpath_clones The C57BL/6J tiling path clone subset from the RP23/24 libraries. DS_2163 ens_35_COX_SNP SNPs formed when comparing the COX haplotype against PGF DS_2164 ens_35_COX_DIP DIPs formed when comparing the COX haplotype against PGF DS_2165 ens_35_QBL_SNP SNPs formed when comparing the QBL haplotype against PGF DS_2166 ens_35_QBL_DIP DIPs formed when comparing the QBL haplotype against PGF DS_2167 ens_35_APD_SNP SNPs formed when comparing the APD haplotype against PGF DS_2168 ens_35_APD_DIP DIPs formed when comparing the APD haplotype against PGF DS_2169 ens_35_DBB_SNP SNPs formed when comparing the DBB haplotype against PGF DS_2170 ens_35_DBB_DIP DIPs formed when comparing the DBB haplotype against PGF DS_2171 ens_35_MCF_SNP SNPs formed when comparing the MCF haplotype against PGF DS_2172 ens_35_MCF_DIP DIPs formed when comparing the MCF haplotype against PGF DS_2173 ens_35_MANN_SNP SNPs formed when comparing the MANN haplotype against PGF DS_2174 ens_35_MANN_DIP DIPs formed when comparing the MANN haplotype against PGF DS_2175 ens_35_SSTO_SNP SNPs formed when comparing the SSTO haplotype against PGF DS_2176 ens_35_SSTO_DIP DIPs formed when comparing the SSTO haplotype against PGF DS_2177 ens_35_operon Mapping of Operon primers to NCBI35 DS_2178 ens_m34_operon Mapping of Operon primers to NCBIM34 DS_2179 ens_m35_operon Mapping of Operon primers to NCBIM35 DS_2180 ens_36_fosmid Fosmids positioned by pairing SSAHA2 alignments of their sequence ends to the NCBI36 assembly. DS_2181 ens_36_agfosmid Agincourt Fosmids positioned by pairing SSAHA2 alignments of their sequence ends to the NCBI36 assembly. DS_2182 ens_36_chori17 CHORI 17 BAC DAS Source For 36 Human Assembly: The BAC end read sequences have been mapped to the NCBI36 Human assembly using SSAHA2 and the BACs positioned from suitable alignment pairs. DS_2183 swat_m36_Rassf1aMV Rassf1aMV -- Viral insertion sites SSAHA2 mapped to NCBI M36 assembly (RT35882). DS_2184 swat_m33_Nanog Binding sites for Nanog on NCBI M33 assembly (source doi:10.1038/ng1760). DS_2185 swat_m36_Nanog Binding sites for Nanog mapped (using LiftOver) onto NCBI M36 assembly from M33 (source doi:10.1038/ng1760). DS_2186 swat_m33_Oct4 Binding sites for Oct4 on NCBI M33 assembly (source doi:10.1038/ng1760). DS_2187 swat_m36_Oct4 Binding sites for Oct4 mapped (using LiftOver) onto NCBI M36 assembly from M33 (source doi:10.1038/ng1760). DS_2188 ens_m37_micer ens_m37_micer DS_2189 iPfamDomain Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2190 ens_m33_nodclone NCBI Mouse 33 NOD Clones DS_2191 ens_ncbi_35_32krearray BACPAC 32K Rearray DS_2192 ens_ncbi_35_bacend BAC End Pairs DS_2193 ens_ncbi_35_fosmid Fosmid End Pairs DS_2194 ens_rgsc_31_bacend RAT BAC End Pairs DS_2195 ens_rgsc_31_fgenes Rat fgenes Predictions DS_2196 ens_rgsc_31_gnomon Rat Gnomon Predictions DS_2197 ens_rgsc_31_ncbi NCBI Genes DS_2198 ens_rgsc_31_refseq Rat Refseq DS_2199 ens_rgsc_31_rgdgene RGD genes DS_2200 ens_rgsc_31_twinscan Twinscan Gene Predictions DS_2201 Mouse Fosmids at Sanger A special subset of all mouse fosmids (those with clones available at WT Sanger Institute) mapped to M37 DS_2202 GRC region zebrafish genome Zv9 Region reported to the Genome Reference Consortium Zv9 DS_2203 evigan_predictions Alternative splice site predictions from the program Evigan by Qian Liu. DS_2215 PED The Pancreatic Expression database (PED, http://www.pancreasexpression.org) is the main repository for pancreatic cancer derived -omics data DS_2611 TEPIDAS TEPIDAS DS_2612 BCCTB Breast Cancer Campaign Tissue Bank Bioinformatics Portal DS_2613 gencode_exp_verification Tested Gencode transcript splice junctions from experimental validation (UNIL) DS_2614 unc_msdas peptides Mass-Spec peptides mapped to GRCh37 6-frame translations (Univ. North Carolina) DS_2616 EA_regions_36 Affy 500K (redon et al) mapped to NCBI 36 DS_2617 ens_35_aceview Note: the coordinate system for this source was guessed by an automated proceedure at the sanger - if you think this is incorrect please email das-core@sanger.ac.uk with the source id DS_2618 swat_34_rearrangement_hotspots The 130 rearrangement hotspots from doi:10.1038/ng1862 on NCBI34 HG16. DS_2619 swat_36_rearrangement_hotspots 95 of the 130 Rearrangement hotspots from doi:10.1038/ng1862 successfully mapped (from NCBI34 HG16) to NCBI36 HG18 (using UCSC's liftOver). DS_2620 swat_m36_p717tags Mapped insertion tags DS_2627 Selectome Selectome is a database of positive selection on gene trees. DS_2738 DARNED RNA editing instances in human. DS_2739 testbam test bam registration DS_2740 Danio_rerio.VEGA43-clone.transcript Annotation source (returns clones) for Danio_rerio transcript DS_2741 Danio_rerio.VEGA43-clone.translation Annotation source (returns clones) for Danio_rerio translation DS_2742 Danio_rerio.VEGA43.prediction_transcript Annotation source for Danio_rerio prediction_transcript DS_2743 Danio_rerio.VEGA43.reference Danio_rerio Reference server based on VEGA43 assembly. Contains 27 top level entries. DS_2744 Danio_rerio.VEGA43.transcript Annotation source for Danio_rerio transcript DS_2745 Danio_rerio.VEGA43.translation Annotation source for Danio_rerio translation DS_2753 Cafe Variome Diagnostic Variants (human GRCh 37) Cafe Variome - diagnostic variants (Human GRCh 37) DS_2754 ctcf_ptr blady blah DS_2755 Sample BAM file from Loraine Lab 75 base single end Illumina reads aligned onto the A_thaliana_Jun_2009 (TAIR9) genome assembly using TopHat. The library was prepared from three week old seedlings undergoing simulated drought stress. DS_2763 CATH Domains Manually curated structural domain boundaries for PDB structures DS_2766 CATH Structural Domain Alignments 3D Alignments of highly structurally similar protein domains DS_2769 pbg pJazz large-fragment library by O. Billker group DS_2770 Homo_sapiens.VEGA44-clone.transcript Annotation source (returns clones) for Homo_sapiens transcript DS_2771 Homo_sapiens.VEGA44-clone.translation Annotation source (returns clones) for Homo_sapiens translation DS_2772 Homo_sapiens.VEGA44.karyotype Annotation source for Homo_sapiens karyotype DS_2773 Homo_sapiens.VEGA44.prediction_transcript Annotation source for Homo_sapiens prediction_transcript DS_2774 Homo_sapiens.VEGA44.reference Homo_sapiens Reference server based on VEGA44 assembly. Contains 40 top level entries. DS_2775 Homo_sapiens.VEGA44.transcript Annotation source for Homo_sapiens transcript DS_2776 Homo_sapiens.VEGA44.translation Annotation source for Homo_sapiens translation DS_2777 Mus_musculus.VEGA44-clone.transcript Annotation source (returns clones) for Mus_musculus transcript DS_2778 Mus_musculus.VEGA44-clone.translation Annotation source (returns clones) for Mus_musculus translation DS_2779 Mus_musculus.VEGA44.karyotype Annotation source for Mus_musculus karyotype DS_2780 Mus_musculus.VEGA44.prediction_transcript Annotation source for Mus_musculus prediction_transcript DS_2781 Mus_musculus.VEGA44.reference Mus_musculus Reference server based on VEGA44 assembly. Contains 40 top level entries. DS_2782 Mus_musculus.VEGA44.transcript Annotation source for Mus_musculus transcript DS_2783 Mus_musculus.VEGA44.translation Annotation source for Mus_musculus translation DS_2784 RRBS HIPEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Iris Pigment Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2785 RRBS HRE Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Renal Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2786 RRBS HEK293 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Embryonic Kidney (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2787 RRBS HRPEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Retinal Pigment Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2788 RRBS HPAEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Pulmonary alveolar epithelial cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2789 RRBS NT2-D1 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Malignant Pluripotent Testicular Embryonal Carcinoma (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2790 RRBS NB4 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Acute Promyelocytic Leukemia Cell Line (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2791 RRBS CMK Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Acute Megakaryocytic Leukemia Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2792 RRBS IMR90 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Fetal Lung Fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2793 RRBS GM12892 Reduced representation bisulphite sequencing (RRBS) from ENCODE for B-Lymphocyte (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2794 RRBS SKNSHRA Reduced representation bisulphite sequencing (RRBS) from ENCODE for Neuroblastoma Cell Line Differentiated with Retinoic acid (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2795 RRBS HNPCEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Non-Pignment Ciliary Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2796 RRBS GM12891 Reduced representation bisulphite sequencing (RRBS) from ENCODE for B-Lymphocyte (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2797 RRBS SAEC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Small Airway Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2798 RRBS AG09309 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Adult human toe fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2799 RRBS h1ESC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Embryonic Stem Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2800 RRBS PanIslets Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Pancreatic Islets (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2801 RRBS HCT116 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Colorectal Carcinoma (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2802 RRBS GM12878 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Lymphoblastoid (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2803 RRBS HCPEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Choroid Plexus Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2804 RRBS AG10803 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Adult Human Abdominal Skin Fibroblasts (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2805 RRBS NH-A Reduced representation bisulphite sequencing (RRBS) from ENCODE for Astrocytes (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2806 RRBS Osteobl Reduced representation bisulphite sequencing (RRBS) from ENCODE for Osteoblasts (NHOst) (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2807 RRBS MCF7 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Breast Cancer (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2808 RRBS JURKAT Reduced representation bisulphite sequencing (RRBS) from ENCODE for T Lymphoblastoid (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2809 RRBS SKMC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Skeletal Muscle Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2810 RRBS HCM Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Cardiac Myocytes (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2811 RRBS HRCEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Renal Cortical Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2812 RRBS AG09319 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Adult human gum tissue fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2813 RRBS NHDF-neo Reduced representation bisulphite sequencing (RRBS) from ENCODE for Neonatal Human Dermal Fibroblasts (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2814 RRBS HEEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Esophageal Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2815 RRBS HAEpiC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Amniotic Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2816 RRBS HMEC Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Mammary Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2817 RRBS GM19240 Reduced representation bisulphite sequencing (RRBS) from ENCODE for B-Lymphocyte (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2818 RRBS AG04450 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Fetal lung fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2819 RRBS HSMMtube Reduced representation bisulphite sequencing (RRBS) from ENCODE for skeletal muscle myotubes differentiated from the HSMM cell line (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2820 RRBS HEPG2 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Hepatocellular Liver Carcinoma Cell (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2821 RRBS GM19239 Reduced representation bisulphite sequencing (RRBS) from ENCODE for B-Lymphocyte (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2822 RRBS K562 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Mylogenous Leukaemia Line (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2823 RRBS Fibrobl Reduced representation bisulphite sequencing (RRBS) from ENCODE for Child Fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2824 RRBS NHBE Reduced representation bisulphite sequencing (RRBS) from ENCODE for Normal Human Bronchial Epithelial Cells (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2825 RRBS HCF Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Cardiac Fibroblasts (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2826 RRBS AG04449 Reduced representation bisulphite sequencing (RRBS) from ENCODE for Fetal thigh fibroblast (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_2827 RRBS Melano Reduced representation bisulphite sequencing (RRBS) from ENCODE for Melanocytes (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_4075 Homo_sapiens.VEGA46-clone.transcript Annotation source (returns clones) for Homo_sapiens transcript DS_4076 Homo_sapiens.VEGA46-clone.translation Annotation source (returns clones) for Homo_sapiens translation DS_4077 Homo_sapiens.VEGA46.karyotype Annotation source for Homo_sapiens karyotype DS_4078 Homo_sapiens.VEGA46.prediction_transcript Annotation source for Homo_sapiens prediction_transcript DS_4079 Homo_sapiens.VEGA46.reference Homo_sapiens Reference server based on VEGA46 assembly. Contains 76 top level entries. DS_4080 Homo_sapiens.VEGA46.transcript Annotation source for Homo_sapiens transcript DS_4081 Homo_sapiens.VEGA46.translation Annotation source for Homo_sapiens translation DS_4082 Mus_musculus.VEGA46-clone.transcript Annotation source (returns clones) for Mus_musculus transcript DS_4083 Mus_musculus.VEGA46-clone.translation Annotation source (returns clones) for Mus_musculus translation DS_4084 Mus_musculus.VEGA46.karyotype Annotation source for Mus_musculus karyotype DS_4085 Mus_musculus.VEGA46.prediction_transcript Annotation source for Mus_musculus prediction_transcript DS_4086 Mus_musculus.VEGA46.reference Mus_musculus Reference server based on VEGA46 assembly. Contains 40 top level entries. DS_4087 Mus_musculus.VEGA46.transcript Annotation source for Mus_musculus transcript DS_4088 Mus_musculus.VEGA46.translation Annotation source for Mus_musculus translation DS_4089 Pan_troglodytes.VEGA46-clone.transcript Annotation source (returns clones) for Pan_troglodytes transcript DS_4090 Pan_troglodytes.VEGA46-clone.translation Annotation source (returns clones) for Pan_troglodytes translation DS_4091 Pan_troglodytes.VEGA46.prediction_transcript Annotation source for Pan_troglodytes prediction_transcript DS_4092 Pan_troglodytes.VEGA46.reference Pan_troglodytes Reference server based on VEGA46 assembly. Contains 1 top level entries. DS_4093 Pan_troglodytes.VEGA46.transcript Annotation source for Pan_troglodytes transcript DS_4094 Pan_troglodytes.VEGA46.translation Annotation source for Pan_troglodytes translation DS_5953 EST (Nicotiana) 259,895 Nicotiana EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5954 GSS (Oryza_alta) 151,024 Oryza_alta GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_5955 EST (Mimulus) 626,811 Mimulus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5956 EST (Medicago) 111,293 Medicago EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_5957 EST (Helianthus) 106,250 Helianthus EST sequences mapped to MSU version 6 of Oryza_sativa DS_5958 EST_Cluster (Aquilegia) 129,308 Aquilegia EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5959 EST (Glycine) 360,608 Glycine EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_5960 EST_Cluster (Malus) 268,435 Malus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5961 EST (Saccharum) 266,904 Saccharum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_5962 EST_Cluster (Glycine) 123,198 Glycine EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_5963 EST (Citrus) 188,297 Citrus EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_5964 EST (Glycine) 665,911 Glycine EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_5965 EST_Cluster (Physcomitrella) 114,286 Physcomitrella EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5966 EST (Glycine) 534,176 Glycine EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5967 EST (Limnanthes) 111,345 Limnanthes EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5968 EST_Cluster (Triticum) 455,425 Triticum EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5969 EST_Cluster (Vitis) 111,038 Vitis EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5970 EST (Triticum) 662,476 Triticum EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5971 EST_Cluster (Hordeum) 178,407 Hordeum EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5972 EST_Cluster (Solanum) 223,687 Solanum EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5973 Oligo (Oryza_sativa) 151,964 Oryza_sativa Oligo sequences mapped to MSU version 6 of Oryza_sativa DS_5974 EST (Actinidia) 409,431 Actinidia EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5975 EST_Cluster (Zea) 237,718 Zea EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_5976 EST (Pinus) 191,116 Pinus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_5977 EST (Lactuca) 104,729 Lactuca EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_5978 EST (Solanum) 611,435 Solanum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5979 EST (Physcomitrella) 114,710 Physcomitrella EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_5980 EST_Cluster (Helianthus) 102,159 Helianthus EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_5981 EST (Arabidopsis) 1,480,599 Arabidopsis EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5982 EST (Volvox) 114,645 Volvox EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5983 EST_Cluster (Brassica) 646,227 Brassica EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5984 EST_Cluster (Populus) 509,968 Populus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_5985 EST (Musa) 150,081 Musa EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5986 EST (Solanum) 157,131 Solanum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_5987 EST (Gossypium) 858,079 Gossypium EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5988 EST (Solanum) 218,411 Solanum EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_5989 GSS (Oryza_australiensis) 165,467 Oryza_australiensis GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_5990 EST (Coffea) 106,002 Coffea EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5991 EST (Triphysaria) 149,721 Triphysaria EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5992 EST_Cluster (Oryza_sativa) 478,179 Oryza_sativa EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_5993 EST (Physcomitrella) 102,618 Physcomitrella EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_5994 EST (Raphanus) 168,656 Raphanus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_5995 GSS (Oryza_nivara) 574,299 Oryza_nivara GSS sequences mapped to MSU version 6 of Oryza_sativa DS_5996 EST (Ipomoea) 257,040 Ipomoea EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_5997 EST_Cluster (Hordeum) 222,246 Hordeum EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_5998 EST (Zea) 951,921 Zea EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_5999 EST (Arabidopsis) 272,068 Arabidopsis EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6000 EST_Cluster (Brassica) 293,399 Brassica EST_Cluster markers mapped to Araly version 1 of Arabidopsis_lyrata DS_6001 GSS (Oryza_minuta) 1,006,346 Oryza_minuta GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6002 EST (Sorghum) 281,738 Sorghum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6003 EST (Oryza_sativa) 1,410,571 Oryza_sativa EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6004 EST (Vitis) 279,002 Vitis EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6005 EST_Cluster (Gossypium) 217,599 Gossypium EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6006 EST_Cluster (Arabidopsis) 132,146 Arabidopsis EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6007 GSS (Oryza_australiensis) 1,067,805 Oryza_australiensis GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6008 EST_Cluster (Triticum) 134,234 Triticum EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6009 EST_Cluster (Hordeum) 280,834 Hordeum EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6010 EST_Cluster (Populus) 173,965 Populus EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6011 EST_Cluster (Triticum) 488,376 Triticum EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6012 EST (Gossypium) 368,084 Gossypium EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6013 EST (Lactuca) 165,260 Lactuca EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6014 EST_Cluster (Zea) 299,129 Zea EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6015 EST (Nicotiana) 615,076 Nicotiana EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6016 GSS (Oryza_ridleyi) 166,349 Oryza_ridleyi GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6017 EST (Panicum) 176,359 Panicum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6018 EST (Picea) 115,387 Picea EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6019 EST (Malus) 123,354 Malus EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6020 EST (Nicotiana) 113,323 Nicotiana EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6021 EST (Glycine) 269,540 Glycine EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6022 EST (Solanum) 405,995 Solanum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6023 EST (Actinidia) 104,098 Actinidia EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6024 mRNA (Zea) 139,316 Zea mRNA sequences mapped to BGI version 2005-01 of Oryza_indica DS_6025 EST (Mimulus) 390,705 Mimulus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6026 EST (Vitis) 642,330 Vitis EST sequences mapped to MSU version 6 of Oryza_sativa DS_6027 EST (Picea) 223,480 Picea EST sequences mapped to MSU version 6 of Oryza_sativa DS_6028 EST (Lactuca) 285,844 Lactuca EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6029 mRNA (Zea) 150,239 Zea mRNA sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6030 EST (Carica) 226,289 Carica EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6031 EST_Cluster (Triticum) 345,411 Triticum EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_6032 QTL (Oryza_sativa) 8,216 Oryza_sativa QTL QTL mapped to MSU version 6 of Oryza_sativa DS_6033 EST_Cluster (Raphanus) 103,070 Raphanus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6034 EST_Cluster (Prunus) 173,873 Prunus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6035 EST (Arabidopsis) 661,529 Arabidopsis EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6036 EST (Mimulus) 270,087 Mimulus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6037 EST (Brassica) 496,938 Brassica EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6038 EST (Hordeum) 159,831 Hordeum EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6039 GSS (Oryza_punctata) 102,777 Oryza_punctata GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6040 EST (Hordeum) 672,236 Hordeum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6041 EST_Cluster (Glycine) 183,076 Glycine EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6042 EST (Eucalyptus) 129,621 Eucalyptus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6043 EST (Nicotiana) 224,469 Nicotiana EST sequences mapped to MSU version 6 of Oryza_sativa DS_6044 mRNA (Oryza_sativa) 129,246 Oryza_sativa mRNA sequences mapped to MSU version 6 of Oryza_sativa DS_6045 EST (Triticum) 1,622,880 Triticum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6046 EST (Ginkgo) 118,243 Ginkgo EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6047 EST_Cluster (Triticum) 319,048 Triticum EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6048 EST (Adiantum) 131,443 Adiantum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6049 EST (Glycine) 259,011 Glycine EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6050 EST (Phaseolus) 103,305 Phaseolus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6051 EST (Raphanus) 170,157 Raphanus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6052 EST (Theobroma) 194,448 Theobroma EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6053 EST (Malus) 197,847 Malus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6054 EST (Hordeum) 362,119 Hordeum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6055 EST (Prunus) 117,423 Prunus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6056 EST (Festuca) 326,355 Festuca EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6057 EST (Triticum) 1,422,092 Triticum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6058 EST (Raphanus) 352,170 Raphanus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6059 GSS (Oryza_punctata) 502,825 Oryza_punctata GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6060 EST (Manihot) 114,707 Manihot EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6061 EST (Artemisia) 129,283 Artemisia EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6062 EST (Vitis) 371,979 Vitis EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6063 EST (Pinus) 130,604 Pinus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6064 EST (Zea) 2,492,684 Zea EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6065 EST (Poncirus) 210,953 Poncirus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6066 EST (Juglans) 349,308 Juglans EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6067 EST_Cluster (Gossypium) 329,099 Gossypium EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6068 EST_Cluster (Oryza_sativa) 362,050 Oryza_sativa EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6069 EST (Pinus) 184,400 Pinus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6070 EST_Cluster (Citrus) 279,033 Citrus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6071 EST_Cluster (Zea) 423,869 Zea EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6072 EST (Cucumis) 128,096 Cucumis EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6073 EST (Nicotiana) 281,040 Nicotiana EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6074 EST (Physcomitrella) 160,312 Physcomitrella EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6075 EST (Populus) 322,750 Populus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6076 EST (Vitis) 954,344 Vitis EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6077 EST (Medicago) 180,391 Medicago EST sequences mapped to MSU version 6 of Oryza_sativa DS_6078 EST_Cluster (Lactuca) 212,203 Lactuca EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6079 EST (Vitis) 289,951 Vitis EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6080 EST_Cluster (Sorghum) 103,095 Sorghum EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6081 EST (Oryza_sativa) 1,259,576 Oryza_sativa EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6082 EST (Medicago) 210,244 Medicago EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6083 EST (Medicago) 479,774 Medicago EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6084 EST_Cluster (Picea) 132,772 Picea EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6085 EST_Cluster (Sorghum) 146,422 Sorghum EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6086 EST (Actinidia) 115,119 Actinidia EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6087 EST (Glycine) 1,236,342 Glycine EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6088 EST_Cluster (Populus) 114,263 Populus EST_Cluster markers mapped to Araly version 1 of Arabidopsis_lyrata DS_6089 EST (Hordeum) 524,972 Hordeum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6090 EST (Malus) 576,771 Malus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6091 EST (Juglans) 138,196 Juglans EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6092 EST (Populus) 113,144 Populus EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6093 EST (Solanum) 170,705 Solanum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6094 EST_Cluster (Arabidopsis) 111,394 Arabidopsis EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6095 EST (Cynodon) 211,257 Cynodon EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6096 EST (Panicum) 318,572 Panicum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6097 EST (Festuca) 166,857 Festuca EST sequences mapped to MSU version 6 of Oryza_sativa DS_6098 EST (Oryza_sativa) 145,215 Oryza_sativa EST sequences mapped to AGI version 454.pools.1.1 of Oryza_barthii DS_6099 EST (Malus) 149,420 Malus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6100 mRNA (Oryza_sativa) 118,278 Oryza_sativa mRNA sequences mapped to BGI version 2005-01 of Oryza_indica DS_6101 EST (Linum) 111,752 Linum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6102 EST (Lotus) 102,727 Lotus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6103 EST (Malus) 292,799 Malus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6104 EST (Lotus) 175,829 Lotus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6105 EST (Sorghum) 320,113 Sorghum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6106 EST (Euphorbia) 102,919 Euphorbia EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6107 EST (Citrus) 186,790 Citrus EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6108 EST (Pinus) 232,208 Pinus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6109 EST (Populus) 1,033,078 Populus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6110 SNPs (Arabidopsis Diversity) SNPs (Arabidopsis Diversity) DS_6111 EST (Picea) 103,462 Picea EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6112 EST (Gossypium) 458,512 Gossypium EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6113 EST (Arachis) 105,918 Arachis EST sequences mapped to MSU version 6 of Oryza_sativa DS_6114 EST (Citrus) 353,578 Citrus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6115 EST (Sorghum) 248,553 Sorghum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6116 EST_Cluster (Saccharum) 218,255 Saccharum EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6117 EST_Cluster (Malus) 155,567 Malus EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6118 EST_Cluster (Populus) 107,086 Populus EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6119 EST_Cluster (Zea) 336,277 Zea EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6120 EST (Populus) 172,859 Populus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6121 EST (Coffea) 107,640 Coffea EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6122 EST (Eucalyptus) 158,271 Eucalyptus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6123 EST (Cajanus) 107,519 Cajanus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6124 EST (Phaseolus) 150,760 Phaseolus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6125 EST (Saccharum) 289,127 Saccharum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6126 EST (Citrus) 1,786,319 Citrus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6127 EST (Populus) 405,967 Populus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6128 GSS (Oryza_ridleyi) 842,162 Oryza_ridleyi GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6129 EST (Prunus) 364,112 Prunus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6130 EST (Malus) 110,893 Malus EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6131 EST (Cicer) 211,729 Cicer EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6132 EST (Brassica) 3,304,335 Brassica EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6133 EST (Malus) 189,967 Malus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6134 EST (Zea) 2,103,748 Zea EST sequences mapped to MSU version 6 of Oryza_sativa DS_6135 EST_Cluster (Citrus) 131,831 Citrus EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6136 EST_Cluster (Nicotiana) 115,807 Nicotiana EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6137 EST_Cluster (Saccharum) 196,888 Saccharum EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6138 mRNA (Oryza_sativa) 184,517 Oryza_sativa mRNA sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6139 EST (Sorghum) 109,566 Sorghum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6140 EST_Cluster (Helianthus) 160,186 Helianthus EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6141 EST (Ipomoea) 108,629 Ipomoea EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6142 EST (Vigna) 167,897 Vigna EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6143 EST_Cluster (Gossypium) 128,897 Gossypium EST_Cluster markers mapped to Araly version 1 of Arabidopsis_lyrata DS_6144 EST_Cluster (Glycine) 178,519 Glycine EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6145 EST_Cluster (Brassica) 229,887 Brassica EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6146 EST (Festuca) 272,988 Festuca EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6147 EST_Cluster (Hordeum) 249,820 Hordeum EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6148 GSS (Oryza_rufipogon) 365,607 Oryza_rufipogon GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6149 EST (Gossypium) 134,541 Gossypium EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6150 EST (Arachis) 500,202 Arachis EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6151 EST (Theobroma) 283,602 Theobroma EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6152 mRNA (Oryza_sativa) 159,324 Oryza_sativa mRNA sequences mapped to IGGP version 12X of Vitis_vinifera DS_6153 EST (Arabidopsis) 1,373,234 Arabidopsis EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6154 EST (Oryza_sativa) 1,071,636 Oryza_sativa EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6155 EST (Oryza_sativa) 320,334 Oryza_sativa EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6156 EST (Medicago) 230,390 Medicago EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6157 EST (Sorghum) 159,255 Sorghum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6158 EST (Saccharum) 259,867 Saccharum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6159 EST_Cluster (Vitis) 142,946 Vitis EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6160 EST_Cluster (Brassica) 438,497 Brassica EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6161 EST (Malus) 350,004 Malus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6162 EST (Physcomitrella) 296,049 Physcomitrella EST sequences mapped to MSU version 6 of Oryza_sativa DS_6163 EST_Cluster (Oryza_sativa) 338,638 Oryza_sativa EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_6164 EST (Panicum) 156,610 Panicum EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6165 mRNA (Arabidopsis) 167,685 Arabidopsis mRNA sequences mapped to IGGP version 12X of Vitis_vinifera DS_6166 EST (Solanum) 136,308 Solanum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6167 EST (Selaginella) 110,865 Selaginella EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6168 EST (Cucumis) 292,265 Cucumis EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6169 EST (Oryza_sativa) 580,119 Oryza_sativa EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6170 EST (Zea) 651,539 Zea EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6171 EST_Cluster (Oryza_sativa) 191,880 Oryza_sativa EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6172 EST (Brassica) 2,034,716 Brassica EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6173 EST (Nicotiana) 142,159 Nicotiana EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6174 EST (Populus) 183,728 Populus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6175 EST_Cluster (Triticum) 433,834 Triticum EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6176 EST (Festuca) 149,779 Festuca EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6177 EST_Cluster (Oryza_sativa) 325,612 Oryza_sativa EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6178 EST (Theobroma) 257,670 Theobroma EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6179 EST_Cluster (Glycine) 357,013 Glycine EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6180 EST (Theobroma) 178,511 Theobroma EST sequences mapped to MSU version 6 of Oryza_sativa DS_6181 EST (Phaseolus) 157,920 Phaseolus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6182 EST (Populus) 108,242 Populus EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6183 EST (Agrostis) 124,027 Agrostis EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6184 EST_Cluster (Brassica) 128,946 Brassica EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6185 EST_Cluster (Gossypium) 217,283 Gossypium EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6186 EST (Oryza_sativa) 994,446 Oryza_sativa EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6187 EST (Vigna) 102,055 Vigna EST sequences mapped to MSU version 6 of Oryza_sativa DS_6188 EST (Vitis) 251,409 Vitis EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6189 EST (Capsicum) 176,936 Capsicum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6190 mRNA (Oryza_sativa) 127,928 Oryza_sativa mRNA sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6191 EST_Cluster (Saccharum) 129,180 Saccharum EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6192 mRNA (Populus) 189,542 Populus mRNA sequences mapped to IGGP version 12X of Vitis_vinifera DS_6193 EST (Citrus) 276,039 Citrus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6194 EST (Physcomitrella) 416,234 Physcomitrella EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6195 GSS (Oryza_nivara) 168,025 Oryza_nivara GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6196 EST (Saccharum) 105,652 Saccharum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6197 EST (Phaseolus) 110,029 Phaseolus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6198 EST (Festuca) 170,860 Festuca EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6199 EST (Raphanus) 788,031 Raphanus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6200 EST_Cluster (Solanum) 100,478 Solanum EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6201 EST (Saccharum) 174,640 Saccharum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6202 EST (Picea) 235,016 Picea EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6203 EST (Picea) 587,740 Picea EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6204 EST (Physcomitrella) 176,524 Physcomitrella EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6205 EST (Helianthus) 105,178 Helianthus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6206 EST_Cluster (Sorghum) 127,989 Sorghum EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6207 EST (Glycine) 532,173 Glycine EST sequences mapped to MSU version 6 of Oryza_sativa DS_6208 EST (Zea) 1,670,557 Zea EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6209 EST_Cluster (Arabidopsis) 301,985 Arabidopsis EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6210 EST (Vigna) 104,916 Vigna EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6211 EST (Prunus) 110,920 Prunus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6212 EST (Ricinus) 113,124 Ricinus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6213 GSS (Oryza_minuta) 221,542 Oryza_minuta GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6214 EST_Cluster (Sorghum) 186,729 Sorghum EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6215 EST (Eucalyptus) 440,941 Eucalyptus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6216 EST_Cluster (Triticum) 171,747 Triticum EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6217 EST (Nicotiana) 161,945 Nicotiana EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6218 EST (Festuca) 125,095 Festuca EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6219 EST (Helianthus) 240,582 Helianthus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6220 EST (Glycine) 332,673 Glycine EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6221 EST (Arabidopsis) 578,158 Arabidopsis EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6222 EST (Triticum) 1,319,165 Triticum EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6223 EST (Gossypium) 211,889 Gossypium EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6224 EST_Cluster (Populus) 263,138 Populus EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6225 GSS (Oryza_granulata) 116,272 Oryza_granulata GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6226 mRNA (Arabidopsis) 111,121 Arabidopsis mRNA sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6227 EST (Arabidopsis) 662,987 Arabidopsis EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6228 EST (Triticum) 430,064 Triticum EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6229 EST_Cluster (Gossypium) 152,452 Gossypium EST_Cluster markers mapped to IBI version 1.0 of Brachypodium_distachyon DS_6230 EST (Theobroma) 232,357 Theobroma EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6231 EST (Humulus) 129,714 Humulus EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6232 EST (Panicum) 135,668 Panicum EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6233 SNPs/Indels (Maize Diversity) SNPs/Indels (Maize Diversity) DS_6234 mRNA (Zea) 338,734 Zea mRNA sequences mapped to IGGP version 12X of Vitis_vinifera DS_6235 EST (Solanum) 309,582 Solanum EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6236 EST (Arachis) 187,371 Arachis EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6237 EST (Hordeum) 243,353 Hordeum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6238 EST (Mimulus) 353,281 Mimulus EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6239 EST_Cluster (Zea) 523,010 Zea EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6240 EST (Oryza_sativa) 2,737,225 Oryza_sativa EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6241 Oligo (Oryza_sativa) 153,482 Oryza_sativa Oligo sequences mapped to BGI version 2005-01 of Oryza_indica DS_6242 EST (Actinidia) 143,967 Actinidia EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6243 EST_Cluster (Vitis) 138,124 Vitis EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6244 EST (Physcomitrella) 176,284 Physcomitrella EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6245 EST (Zea) 1,723,991 Zea EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6246 EST (Actinidia) 261,015 Actinidia EST sequences mapped to MSU version 6 of Oryza_sativa DS_6247 GSS (Oryza_officinalis) 140,878 Oryza_officinalis GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6248 EST (Triticum) 1,153,915 Triticum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6249 EST (Phaseolus) 101,085 Phaseolus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6250 EST (Picea) 173,703 Picea EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6251 EST (Hordeum) 644,951 Hordeum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6252 EST (Cicer) 412,514 Cicer EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6253 GSS (Oryza_coarctata) 140,442 Oryza_coarctata GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6254 GSS (Oryza_brachyantha) 248,641 Oryza_brachyantha GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6255 EST (Lactuca) 127,989 Lactuca EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6256 GSS (Oryza_coarctata) 410,100 Oryza_coarctata GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6257 EST (Brassica) 1,136,236 Brassica EST sequences mapped to MSU version 6 of Oryza_sativa DS_6258 EST (Panicum) 462,123 Panicum EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6259 EST (Oryza_sativa) 1,378,579 Oryza_sativa EST sequences mapped to MSU version 6 of Oryza_sativa DS_6260 EST (Gossypium) 204,096 Gossypium EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6261 EST (Vitis) 226,783 Vitis EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6262 EST_Cluster (Arabidopsis) 258,713 Arabidopsis EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6263 EST (Zea) 1,438,958 Zea EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6264 EST (Amborella) 126,571 Amborella EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6265 EST (Raphanus) 104,764 Raphanus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6266 EST (Helianthus) 120,018 Helianthus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6267 EST (Arabidopsis) 250,823 Arabidopsis EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6268 EST (Brassica) 1,249,593 Brassica EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6269 EST (Medicago) 126,763 Medicago EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6270 EST_Cluster (Oryza_sativa) 672,599 Oryza_sativa EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6271 EST (Chlamydomonas) 104,753 Chlamydomonas EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6272 EST (Prunus) 144,949 Prunus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6273 EST_Cluster (Hordeum) 208,885 Hordeum EST_Cluster markers mapped to JGI version 1.4 of Sorghum_bicolor DS_6274 mRNA (Zea) 206,795 Zea mRNA sequences mapped to MSU version 6 of Oryza_sativa DS_6275 EST (Physcomitrella) 110,853 Physcomitrella EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6276 GSS (Oryza_granulata) 639,372 Oryza_granulata GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6277 EST (Vigna) 173,445 Vigna EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6278 EST_Cluster (Populus) 221,187 Populus EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6279 EST (Mimulus) 223,695 Mimulus EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6280 EST (Aquilegia) 121,062 Aquilegia EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6281 EST (Brassica) 999,247 Brassica EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6282 EST_Cluster (Brassica) 169,969 Brassica EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6283 GSS (Oryza_alta) 743,479 Oryza_alta GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6284 EST (Panicum) 536,155 Panicum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6285 GSS (Oryza_officinalis) 723,244 Oryza_officinalis GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6286 EST (Lactuca) 159,750 Lactuca EST sequences mapped to MSU version 6 of Oryza_sativa DS_6287 EST (Saccharum) 316,797 Saccharum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6288 EST (Nicotiana) 117,501 Nicotiana EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6289 EST (Citrus) 615,852 Citrus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6290 EST (Citrus) 502,784 Citrus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6291 EST_Cluster (Gossypium) 610,644 Gossypium EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6292 EST (Triphysaria) 379,918 Triphysaria EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6293 EST (Hordeum) 499,908 Hordeum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6294 EST (Pinus) 152,426 Pinus EST sequences mapped to MSU version 6 of Oryza_sativa DS_6295 EST_Cluster (Zea) 1,135,962 Zea EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6296 EST_Cluster (Sorghum) 130,063 Sorghum EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_6297 EST_Cluster (Solanum) 156,828 Solanum EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6298 mRNA (Zea) 155,243 Zea mRNA sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6299 EST (Gossypium) 278,670 Gossypium EST sequences mapped to MSU version 6 of Oryza_sativa DS_6300 EST_Cluster (Medicago) 183,672 Medicago EST_Cluster markers mapped to IGGP version 12X of Vitis_vinifera DS_6301 EST_Cluster (Vitis) 142,009 Vitis EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6302 EST (Mimulus) 211,970 Mimulus EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6303 EST (Triticum) 626,347 Triticum EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6304 EST (Mimulus) 475,193 Mimulus EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6305 GSS (Oryza_rufipogon) 110,815 Oryza_rufipogon GSS sequences mapped to BGI version 2005-01 of Oryza_indica DS_6306 EST (Solanum) 228,987 Solanum EST sequences mapped to MSU version 6 of Oryza_sativa DS_6307 EST_Cluster (Lactuca) 114,037 Lactuca EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6308 EST (Picea) 114,242 Picea EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6309 EST (Vitis) 501,548 Vitis EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6310 SNPs/Indels (Rice Diversity) SNPs/Indels (Rice Diversity) DS_6311 EST (Populus) 372,849 Populus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6312 EST (Gossypium) 133,881 Gossypium EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6313 EST_Cluster (Saccharum) 245,228 Saccharum EST_Cluster markers mapped to MSU version 6 of Oryza_sativa DS_6314 EST (Hordeum) 206,481 Hordeum EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6315 EST (Mimulus) 310,632 Mimulus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6316 GSS (Oryza_glaberrima) 204,379 Oryza_glaberrima GSS sequences mapped to MSU version 6 of Oryza_sativa DS_6317 EST (Brassica) 489,467 Brassica EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6318 EST (Helianthus) 171,311 Helianthus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6319 EST (Picea) 248,304 Picea EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6320 EST (Panicum) 458,022 Panicum EST sequences mapped to BGI version 2005-01 of Oryza_indica DS_6321 EST (Actinidia) 111,972 Actinidia EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6322 EST_Cluster (Oryza_sativa) 208,283 Oryza_sativa EST_Cluster markers mapped to TAIR version 10 of Arabidopsis_thaliana DS_6323 EST (Limnanthes) 273,341 Limnanthes EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6324 EST_Cluster (Malus) 101,711 Malus EST_Cluster markers mapped to JGI version 2.0 of Populus_trichocarpa DS_6325 EST_Cluster (Saccharum) 189,992 Saccharum EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_6326 EST (Arabidopsis) 528,111 Arabidopsis EST sequences mapped to MSU version 6 of Oryza_sativa DS_6327 EST (Cajanus) 250,118 Cajanus EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6328 EST (Lotus) 136,266 Lotus EST sequences mapped to JGI version 2.0 of Populus_trichocarpa DS_6329 Gramene Genes genes served up out of gramene DS_6330 EST (Triticum) 1,081,136 Triticum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6331 EST (Raphanus) 509,271 Raphanus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6332 EST (Sorghum) 231,614 Sorghum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6333 EST (Zea) 343,215 Zea EST sequences mapped to Araly version 1 of Arabidopsis_lyrata DS_6334 mRNA (Zea) 115,299 Zea mRNA sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6335 EST_Cluster (Zea) 245,344 Zea EST_Cluster markers mapped to BGI version 2005-01 of Oryza_indica DS_6336 EST (Panicum) 459,704 Panicum EST sequences mapped to JGI version 1.4 of Sorghum_bicolor DS_6337 EST (Liriodendron) 100,515 Liriodendron EST sequences mapped to IGGP version 12X of Vitis_vinifera DS_6338 EST (Citrus) 667,231 Citrus EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6339 EST (Theobroma) 123,246 Theobroma EST sequences mapped to TAIR version 10 of Arabidopsis_thaliana DS_6340 EST (Brassica) 887,279 Brassica EST sequences mapped to IBI version 1.0 of Brachypodium_distachyon DS_6341 Ailuropoda_melanoleuca.ailMel1.reference Ailuropoda_melanoleuca Reference server based on ailMel1 assembly. Contains 81467 top level entries. DS_6342 Ailuropoda_melanoleuca.ailMel1.transcript Annotation source for Ailuropoda_melanoleuca transcript DS_6343 Ailuropoda_melanoleuca.ailMel1.translation Annotation source for Ailuropoda_melanoleuca translation DS_6344 Anolis_carolinensis.AnoCar2.0.reference Anolis_carolinensis Reference server based on AnoCar2.0 assembly. Contains 6457 top level entries. DS_6345 Anolis_carolinensis.AnoCar2.0.transcript Annotation source for Anolis_carolinensis transcript DS_6346 Anolis_carolinensis.AnoCar2.0.translation Annotation source for Anolis_carolinensis translation DS_6347 Bos_taurus.UMD3.1.prediction_transcript Annotation source for Bos_taurus prediction_transcript DS_6348 Bos_taurus.UMD3.1.reference Bos_taurus Reference server based on UMD3.1 assembly. Contains 3317 top level entries. DS_6349 Bos_taurus.UMD3.1.transcript Annotation source for Bos_taurus transcript DS_6350 Bos_taurus.UMD3.1.translation Annotation source for Bos_taurus translation DS_6351 Caenorhabditis_elegans.WS220.reference Caenorhabditis_elegans Reference server based on WS220 assembly. Contains 7 top level entries. DS_6352 Caenorhabditis_elegans.WS220.transcript Annotation source for Caenorhabditis_elegans transcript DS_6353 Caenorhabditis_elegans.WS220.translation Annotation source for Caenorhabditis_elegans translation DS_6354 Callithrix_jacchus.C_jacchus3.2.1.reference Callithrix_jacchus Reference server based on C_jacchus3.2.1 assembly. Contains 14205 top level entries. DS_6355 Callithrix_jacchus.C_jacchus3.2.1.transcript Annotation source for Callithrix_jacchus transcript DS_6356 Callithrix_jacchus.C_jacchus3.2.1.translation Annotation source for Callithrix_jacchus translation DS_6357 Canis_familiaris.BROADD2.prediction_transcript Annotation source for Canis_familiaris prediction_transcript DS_6358 Canis_familiaris.BROADD2.reference Canis_familiaris Reference server based on BROADD2 assembly. Contains 41 top level entries. DS_6359 Canis_familiaris.BROADD2.transcript Annotation source for Canis_familiaris transcript DS_6360 Canis_familiaris.BROADD2.translation Annotation source for Canis_familiaris translation DS_6361 Cavia_porcellus.cavPor3.prediction_transcript Annotation source for Cavia_porcellus prediction_transcript DS_6362 Cavia_porcellus.cavPor3.reference Cavia_porcellus Reference server based on cavPor3 assembly. Contains 3144 top level entries. DS_6363 Cavia_porcellus.cavPor3.transcript Annotation source for Cavia_porcellus transcript DS_6364 Cavia_porcellus.cavPor3.translation Annotation source for Cavia_porcellus translation DS_6365 Choloepus_hoffmanni.choHof1.prediction_transcript Annotation source for Choloepus_hoffmanni prediction_transcript DS_6366 Choloepus_hoffmanni.choHof1.reference Choloepus_hoffmanni Reference server based on choHof1 assembly. Contains 454510 top level entries. DS_6367 Choloepus_hoffmanni.choHof1.transcript Annotation source for Choloepus_hoffmanni transcript DS_6368 Choloepus_hoffmanni.choHof1.translation Annotation source for Choloepus_hoffmanni translation DS_6369 Ciona_savignyi.CSAV2.0.prediction_transcript Annotation source for Ciona_savignyi prediction_transcript DS_6370 Ciona_savignyi.CSAV2.0.reference Ciona_savignyi Reference server based on CSAV2.0 assembly. Contains 374 top level entries. DS_6371 Ciona_savignyi.CSAV2.0.transcript Annotation source for Ciona_savignyi transcript DS_6372 Ciona_savignyi.CSAV2.0.translation Annotation source for Ciona_savignyi translation DS_6373 Danio_rerio.Zv9.prediction_transcript Annotation source for Danio_rerio prediction_transcript DS_6374 Danio_rerio.Zv9.reference Danio_rerio Reference server based on Zv9 assembly. Contains 1133 top level entries. DS_6375 Danio_rerio.Zv9.transcript Annotation source for Danio_rerio transcript DS_6376 Danio_rerio.Zv9.translation Annotation source for Danio_rerio translation DS_6377 Dasypus_novemcinctus.dasNov2.prediction_transcript Annotation source for Dasypus_novemcinctus prediction_transcript DS_6378 Dasypus_novemcinctus.dasNov2.reference Dasypus_novemcinctus Reference server based on dasNov2 assembly. Contains 271554 top level entries. DS_6379 Dasypus_novemcinctus.dasNov2.transcript Annotation source for Dasypus_novemcinctus transcript DS_6380 Dasypus_novemcinctus.dasNov2.translation Annotation source for Dasypus_novemcinctus translation DS_6381 Dipodomys_ordii.dipOrd1.prediction_transcript Annotation source for Dipodomys_ordii prediction_transcript DS_6382 Dipodomys_ordii.dipOrd1.reference Dipodomys_ordii Reference server based on dipOrd1 assembly. Contains 195994 top level entries. DS_6383 Dipodomys_ordii.dipOrd1.transcript Annotation source for Dipodomys_ordii transcript DS_6384 Dipodomys_ordii.dipOrd1.translation Annotation source for Dipodomys_ordii translation DS_6385 Drosophila_melanogaster.BDGP5.karyotype Annotation source for Drosophila_melanogaster karyotype DS_6386 Drosophila_melanogaster.BDGP5.reference Drosophila_melanogaster Reference server based on BDGP5 assembly. Contains 15 top level entries. DS_6387 Drosophila_melanogaster.BDGP5.transcript Annotation source for Drosophila_melanogaster transcript DS_6388 Drosophila_melanogaster.BDGP5.translation Annotation source for Drosophila_melanogaster translation DS_6389 Echinops_telfairi.TENREC.prediction_transcript Annotation source for Echinops_telfairi prediction_transcript DS_6390 Echinops_telfairi.TENREC.reference Echinops_telfairi Reference server based on TENREC assembly. Contains 297967 top level entries. DS_6391 Echinops_telfairi.TENREC.transcript Annotation source for Echinops_telfairi transcript DS_6392 Echinops_telfairi.TENREC.translation Annotation source for Echinops_telfairi translation DS_6393 Equus_caballus.EquCab2.prediction_transcript Annotation source for Equus_caballus prediction_transcript DS_6394 Equus_caballus.EquCab2.reference Equus_caballus Reference server based on EquCab2 assembly. Contains 9636 top level entries. DS_6395 Equus_caballus.EquCab2.transcript Annotation source for Equus_caballus transcript DS_6396 Equus_caballus.EquCab2.translation Annotation source for Equus_caballus translation DS_6397 Erinaceus_europaeus.HEDGEHOG.prediction_transcript Annotation source for Erinaceus_europaeus prediction_transcript DS_6398 Erinaceus_europaeus.HEDGEHOG.reference Erinaceus_europaeus Reference server based on HEDGEHOG assembly. Contains 352700 top level entries. DS_6399 Erinaceus_europaeus.HEDGEHOG.transcript Annotation source for Erinaceus_europaeus transcript DS_6400 Erinaceus_europaeus.HEDGEHOG.translation Annotation source for Erinaceus_europaeus translation DS_6401 Felis_catus.CAT.prediction_transcript Annotation source for Felis_catus prediction_transcript DS_6402 Felis_catus.CAT.reference Felis_catus Reference server based on CAT assembly. Contains 202870 top level entries. DS_6403 Felis_catus.CAT.transcript Annotation source for Felis_catus transcript DS_6404 Felis_catus.CAT.translation Annotation source for Felis_catus translation DS_6405 Gadus_morhua.gadMor1.prediction_transcript Annotation source for Gadus_morhua prediction_transcript DS_6406 Gadus_morhua.gadMor1.reference Gadus_morhua Reference server based on gadMor1 assembly. Contains 398859 top level entries. DS_6407 Gadus_morhua.gadMor1.transcript Annotation source for Gadus_morhua transcript DS_6408 Gadus_morhua.gadMor1.translation Annotation source for Gadus_morhua translation DS_6409 Gallus_gallus.WASHUC2.prediction_transcript Annotation source for Gallus_gallus prediction_transcript DS_6410 Gallus_gallus.WASHUC2.reference Gallus_gallus Reference server based on WASHUC2 assembly. Contains 57 top level entries. DS_6411 Gallus_gallus.WASHUC2.transcript Annotation source for Gallus_gallus transcript DS_6412 Gallus_gallus.WASHUC2.translation Annotation source for Gallus_gallus translation DS_6413 Gasterosteus_aculeatus.BROADS1.reference Gasterosteus_aculeatus Reference server based on BROADS1 assembly. Contains 1844 top level entries. DS_6414 Gasterosteus_aculeatus.BROADS1.transcript Annotation source for Gasterosteus_aculeatus transcript DS_6415 Gasterosteus_aculeatus.BROADS1.translation Annotation source for Gasterosteus_aculeatus translation DS_6416 Gorilla_gorilla.gorGor3.1.prediction_transcript Annotation source for Gorilla_gorilla prediction_transcript DS_6417 Gorilla_gorilla.gorGor3.1.reference Gorilla_gorilla Reference server based on gorGor3.1 assembly. Contains 27 top level entries. DS_6418 Gorilla_gorilla.gorGor3.1.transcript Annotation source for Gorilla_gorilla transcript DS_6419 Gorilla_gorilla.gorGor3.1.translation Annotation source for Gorilla_gorilla translation DS_6420 Homo_sapiens.GRCh37.cagetags Annotation source for Homo_sapiens cagetags DS_6421 Homo_sapiens.GRCh37.ditags Annotation source for Homo_sapiens ditags DS_6422 Homo_sapiens.GRCh37.karyotype Annotation source for Homo_sapiens karyotype DS_6423 Homo_sapiens.GRCh37.prediction_transcript Annotation source for Homo_sapiens prediction_transcript DS_6424 Homo_sapiens.GRCh37.reference Homo_sapiens Reference server based on GRCh37 assembly. Contains 217 top level entries. DS_6425 Homo_sapiens.GRCh37.transcript Annotation source for Homo_sapiens transcript DS_6426 Latimeria_chalumnae.LatCha1.prediction_transcript Annotation source for Latimeria_chalumnae prediction_transcript DS_6427 Latimeria_chalumnae.LatCha1.reference Latimeria_chalumnae Reference server based on LatCha1 assembly. Contains 22819 top level entries. DS_6428 Latimeria_chalumnae.LatCha1.transcript Annotation source for Latimeria_chalumnae transcript DS_6429 Latimeria_chalumnae.LatCha1.translation Annotation source for Latimeria_chalumnae translation DS_6430 Loxodonta_africana.loxAfr3.prediction_transcript Annotation source for Loxodonta_africana prediction_transcript DS_6431 Loxodonta_africana.loxAfr3.reference Loxodonta_africana Reference server based on loxAfr3 assembly. Contains 2353 top level entries. DS_6432 Loxodonta_africana.loxAfr3.transcript Annotation source for Loxodonta_africana transcript DS_6433 Loxodonta_africana.loxAfr3.translation Annotation source for Loxodonta_africana translation DS_6434 Macaca_mulatta.MMUL_1.prediction_transcript Annotation source for Macaca_mulatta prediction_transcript DS_6435 Macaca_mulatta.MMUL_1.reference Macaca_mulatta Reference server based on MMUL_1 assembly. Contains 121811 top level entries. DS_6436 Macaca_mulatta.MMUL_1.transcript Annotation source for Macaca_mulatta transcript DS_6437 Macaca_mulatta.MMUL_1.translation Annotation source for Macaca_mulatta translation DS_6438 Macropus_eugenii.Meug_1.0.prediction_transcript Annotation source for Macropus_eugenii prediction_transcript DS_6439 Macropus_eugenii.Meug_1.0.reference Macropus_eugenii Reference server based on Meug_1.0 assembly. Contains 582687 top level entries. DS_6440 Macropus_eugenii.Meug_1.0.transcript Annotation source for Macropus_eugenii transcript DS_6441 Macropus_eugenii.Meug_1.0.translation Annotation source for Macropus_eugenii translation DS_6442 Meleagris_gallopavo.UMD2.prediction_transcript Annotation source for Meleagris_gallopavo prediction_transcript DS_6443 Meleagris_gallopavo.UMD2.reference Meleagris_gallopavo Reference server based on UMD2 assembly. Contains 6166 top level entries. DS_6444 Meleagris_gallopavo.UMD2.transcript Annotation source for Meleagris_gallopavo transcript DS_6445 Meleagris_gallopavo.UMD2.translation Annotation source for Meleagris_gallopavo translation DS_6446 Microcebus_murinus.micMur1.prediction_transcript Annotation source for Microcebus_murinus prediction_transcript DS_6447 Microcebus_murinus.micMur1.reference Microcebus_murinus Reference server based on micMur1 assembly. Contains 172937 top level entries. DS_6448 Microcebus_murinus.micMur1.transcript Annotation source for Microcebus_murinus transcript DS_6449 Microcebus_murinus.micMur1.translation Annotation source for Microcebus_murinus translation DS_6450 Monodelphis_domestica.BROADO5.reference Monodelphis_domestica Reference server based on BROADO5 assembly. Contains 11 top level entries. DS_6451 Monodelphis_domestica.BROADO5.transcript Annotation source for Monodelphis_domestica transcript DS_6452 Monodelphis_domestica.BROADO5.translation Annotation source for Monodelphis_domestica translation DS_6453 Multi.Ensembl-GeneID.spine Gene Summary Annotation source DS_6454 Mus_musculus.NCBIM37.cagetags Annotation source for Mus_musculus cagetags DS_6455 Mus_musculus.NCBIM37.ditags Annotation source for Mus_musculus ditags DS_6456 Mus_musculus.NCBIM37.karyotype Annotation source for Mus_musculus karyotype DS_6457 Mus_musculus.NCBIM37.prediction_transcript Annotation source for Mus_musculus prediction_transcript DS_6458 Mus_musculus.NCBIM37.reference Mus_musculus Reference server based on NCBIM37 assembly. Contains 211 top level entries. DS_6459 Mus_musculus.NCBIM37.transcript Annotation source for Mus_musculus transcript DS_6460 Myotis_lucifugus.Myoluc2.0.prediction_transcript Annotation source for Myotis_lucifugus prediction_transcript DS_6461 Myotis_lucifugus.Myoluc2.0.reference Myotis_lucifugus Reference server based on Myoluc2.0 assembly. Contains 11654 top level entries. DS_6462 Myotis_lucifugus.Myoluc2.0.transcript Annotation source for Myotis_lucifugus transcript DS_6463 Myotis_lucifugus.Myoluc2.0.translation Annotation source for Myotis_lucifugus translation DS_6464 Nomascus_leucogenys.Nleu1.0.prediction_transcript Annotation source for Nomascus_leucogenys prediction_transcript DS_6465 Nomascus_leucogenys.Nleu1.0.reference Nomascus_leucogenys Reference server based on Nleu1.0 assembly. Contains 17968 top level entries. DS_6466 Nomascus_leucogenys.Nleu1.0.transcript Annotation source for Nomascus_leucogenys transcript DS_6467 Nomascus_leucogenys.Nleu1.0.translation Annotation source for Nomascus_leucogenys translation DS_6468 Ochotona_princeps.pika.prediction_transcript Annotation source for Ochotona_princeps prediction_transcript DS_6469 Ochotona_princeps.pika.reference Ochotona_princeps Reference server based on pika assembly. Contains 193095 top level entries. DS_6470 Ochotona_princeps.pika.transcript Annotation source for Ochotona_princeps transcript DS_6471 Ochotona_princeps.pika.translation Annotation source for Ochotona_princeps translation DS_6472 Ornithorhynchus_anatinus.OANA5.reference Ornithorhynchus_anatinus Reference server based on OANA5 assembly. Contains 291092 top level entries. DS_6473 Ornithorhynchus_anatinus.OANA5.transcript Annotation source for Ornithorhynchus_anatinus transcript DS_6474 Ornithorhynchus_anatinus.OANA5.translation Annotation source for Ornithorhynchus_anatinus translation DS_6475 Oryctolagus_cuniculus.oryCun2.reference Oryctolagus_cuniculus Reference server based on oryCun2 assembly. Contains 3242 top level entries. DS_6476 Oryctolagus_cuniculus.oryCun2.transcript Annotation source for Oryctolagus_cuniculus transcript DS_6477 Oryctolagus_cuniculus.oryCun2.translation Annotation source for Oryctolagus_cuniculus translation DS_6478 Oryzias_latipes.MEDAKA1.ditags Annotation source for Oryzias_latipes ditags DS_6479 Oryzias_latipes.MEDAKA1.prediction_transcript Annotation source for Oryzias_latipes prediction_transcript DS_6480 Oryzias_latipes.MEDAKA1.reference Oryzias_latipes Reference server based on MEDAKA1 assembly. Contains 7188 top level entries. DS_6481 Oryzias_latipes.MEDAKA1.transcript Annotation source for Oryzias_latipes transcript DS_6482 Oryzias_latipes.MEDAKA1.translation Annotation source for Oryzias_latipes translation DS_6483 Otolemur_garnettii.OtoGar3.prediction_transcript Annotation source for Otolemur_garnettii prediction_transcript DS_6484 Otolemur_garnettii.OtoGar3.reference Otolemur_garnettii Reference server based on OtoGar3 assembly. Contains 7652 top level entries. DS_6485 Otolemur_garnettii.OtoGar3.transcript Annotation source for Otolemur_garnettii transcript DS_6486 Otolemur_garnettii.OtoGar3.translation Annotation source for Otolemur_garnettii translation DS_6487 Pan_troglodytes.CHIMP2.1.4.prediction_transcript Annotation source for Pan_troglodytes prediction_transcript DS_6488 Pan_troglodytes.CHIMP2.1.4.reference Pan_troglodytes Reference server based on CHIMP2.1.4 assembly. Contains 24128 top level entries. DS_6489 Pan_troglodytes.CHIMP2.1.4.transcript Annotation source for Pan_troglodytes transcript DS_6490 Pan_troglodytes.CHIMP2.1.4.translation Annotation source for Pan_troglodytes translation DS_6491 Petromyzon_marinus.Pmarinus_7.0.reference Petromyzon_marinus Reference server based on Pmarinus_7.0 assembly. Contains 25005 top level entries. DS_6492 Petromyzon_marinus.Pmarinus_7.0.transcript Annotation source for Petromyzon_marinus transcript DS_6493 Petromyzon_marinus.Pmarinus_7.0.translation Annotation source for Petromyzon_marinus translation DS_6494 Pongo_abelii.PPYG2.prediction_transcript Annotation source for Pongo_abelii prediction_transcript DS_6495 Pongo_abelii.PPYG2.reference Pongo_abelii Reference server based on PPYG2 assembly. Contains 55 top level entries. DS_6496 Pongo_abelii.PPYG2.transcript Annotation source for Pongo_abelii transcript DS_6497 Pongo_abelii.PPYG2.translation Annotation source for Pongo_abelii translation DS_6498 Procavia_capensis.proCap1.prediction_transcript Annotation source for Procavia_capensis prediction_transcript DS_6499 Procavia_capensis.proCap1.reference Procavia_capensis Reference server based on proCap1 assembly. Contains 277109 top level entries. DS_6500 Procavia_capensis.proCap1.transcript Annotation source for Procavia_capensis transcript DS_6501 Procavia_capensis.proCap1.translation Annotation source for Procavia_capensis translation DS_6502 Pteropus_vampyrus.pteVam1.prediction_transcript Annotation source for Pteropus_vampyrus prediction_transcript DS_6503 Pteropus_vampyrus.pteVam1.reference Pteropus_vampyrus Reference server based on pteVam1 assembly. Contains 90637 top level entries. DS_6504 Pteropus_vampyrus.pteVam1.transcript Annotation source for Pteropus_vampyrus transcript DS_6505 Pteropus_vampyrus.pteVam1.translation Annotation source for Pteropus_vampyrus translation DS_6506 Rattus_norvegicus.RGSC3.4.karyotype Annotation source for Rattus_norvegicus karyotype DS_6507 Rattus_norvegicus.RGSC3.4.prediction_transcript Annotation source for Rattus_norvegicus prediction_transcript DS_6508 Rattus_norvegicus.RGSC3.4.reference Rattus_norvegicus Reference server based on RGSC3.4 assembly. Contains 22 top level entries. DS_6509 Rattus_norvegicus.RGSC3.4.transcript Annotation source for Rattus_norvegicus transcript DS_6510 Rattus_norvegicus.RGSC3.4.translation Annotation source for Rattus_norvegicus translation DS_6511 Saccharomyces_cerevisiae.EF4.reference Saccharomyces_cerevisiae Reference server based on EF4 assembly. Contains 17 top level entries. DS_6512 Saccharomyces_cerevisiae.EF4.transcript Annotation source for Saccharomyces_cerevisiae transcript DS_6513 Saccharomyces_cerevisiae.EF4.translation Annotation source for Saccharomyces_cerevisiae translation DS_6514 Sarcophilus_harrisii.DEVIL7.0.reference Sarcophilus_harrisii Reference server based on DEVIL7.0 assembly. Contains 35975 top level entries. DS_6515 Sarcophilus_harrisii.DEVIL7.0.transcript Annotation source for Sarcophilus_harrisii transcript DS_6516 Sarcophilus_harrisii.DEVIL7.0.translation Annotation source for Sarcophilus_harrisii translation DS_6517 Sorex_araneus.COMMON_SHREW1.prediction_transcript Annotation source for Sorex_araneus prediction_transcript DS_6518 Sorex_araneus.COMMON_SHREW1.reference Sorex_araneus Reference server based on COMMON_SHREW1 assembly. Contains 243136 top level entries. DS_6519 Sorex_araneus.COMMON_SHREW1.transcript Annotation source for Sorex_araneus transcript DS_6520 Sorex_araneus.COMMON_SHREW1.translation Annotation source for Sorex_araneus translation DS_6521 Spermophilus_tridecemlineatus.SQUIRREL.reference Spermophilus_tridecemlineatus Reference server based on SQUIRREL assembly. Contains 147878 top level entries. DS_6522 Spermophilus_tridecemlineatus.SQUIRREL.transcript Annotation source for Spermophilus_tridecemlineatus transcript DS_6523 Spermophilus_tridecemlineatus.SQUIRREL.translation Annotation source for Spermophilus_tridecemlineatus translation DS_6524 Sus_scrofa.Sscrofa9.prediction_transcript Annotation source for Sus_scrofa prediction_transcript DS_6525 Sus_scrofa.Sscrofa9.reference Sus_scrofa Reference server based on Sscrofa9 assembly. Contains 20 top level entries. DS_6526 Sus_scrofa.Sscrofa9.transcript Annotation source for Sus_scrofa transcript DS_6527 Sus_scrofa.Sscrofa9.translation Annotation source for Sus_scrofa translation DS_6528 Taeniopygia_guttata.taeGut3.2.4.reference Taeniopygia_guttata Reference server based on taeGut3.2.4 assembly. Contains 69 top level entries. DS_6529 Taeniopygia_guttata.taeGut3.2.4.transcript Annotation source for Taeniopygia_guttata transcript DS_6530 Taeniopygia_guttata.taeGut3.2.4.translation Annotation source for Taeniopygia_guttata translation DS_6531 Takifugu_rubripes.FUGU4.prediction_transcript Annotation source for Takifugu_rubripes prediction_transcript DS_6532 Takifugu_rubripes.FUGU4.reference Takifugu_rubripes Reference server based on FUGU4 assembly. Contains 7214 top level entries. DS_6533 Takifugu_rubripes.FUGU4.transcript Annotation source for Takifugu_rubripes transcript DS_6534 Takifugu_rubripes.FUGU4.translation Annotation source for Takifugu_rubripes translation DS_6535 Tarsius_syrichta.tarSyr1.prediction_transcript Annotation source for Tarsius_syrichta prediction_transcript DS_6536 Tarsius_syrichta.tarSyr1.reference Tarsius_syrichta Reference server based on tarSyr1 assembly. Contains 631266 top level entries. DS_6537 Tarsius_syrichta.tarSyr1.transcript Annotation source for Tarsius_syrichta transcript DS_6538 Tarsius_syrichta.tarSyr1.translation Annotation source for Tarsius_syrichta translation DS_6539 Tetraodon_nigroviridis.TETRAODON8.reference Tetraodon_nigroviridis Reference server based on TETRAODON8 assembly. Contains 27 top level entries. DS_6540 Tetraodon_nigroviridis.TETRAODON8.transcript Annotation source for Tetraodon_nigroviridis transcript DS_6541 Tetraodon_nigroviridis.TETRAODON8.translation Annotation source for Tetraodon_nigroviridis translation DS_6542 Tupaia_belangeri.TREESHREW.prediction_transcript Annotation source for Tupaia_belangeri prediction_transcript DS_6543 Tupaia_belangeri.TREESHREW.reference Tupaia_belangeri Reference server based on TREESHREW assembly. Contains 137753 top level entries. DS_6544 Tupaia_belangeri.TREESHREW.transcript Annotation source for Tupaia_belangeri transcript DS_6545 Tupaia_belangeri.TREESHREW.translation Annotation source for Tupaia_belangeri translation DS_6546 Tursiops_truncatus.turTru1.prediction_transcript Annotation source for Tursiops_truncatus prediction_transcript DS_6547 Tursiops_truncatus.turTru1.reference Tursiops_truncatus Reference server based on turTru1 assembly. Contains 111212 top level entries. DS_6548 Tursiops_truncatus.turTru1.transcript Annotation source for Tursiops_truncatus transcript DS_6549 Tursiops_truncatus.turTru1.translation Annotation source for Tursiops_truncatus translation DS_6550 Vicugna_pacos.vicPac1.prediction_transcript Annotation source for Vicugna_pacos prediction_transcript DS_6551 Vicugna_pacos.vicPac1.reference Vicugna_pacos Reference server based on vicPac1 assembly. Contains 290926 top level entries. DS_6552 Vicugna_pacos.vicPac1.transcript Annotation source for Vicugna_pacos transcript DS_6553 Vicugna_pacos.vicPac1.translation Annotation source for Vicugna_pacos translation DS_6554 Xenopus_tropicalis.JGI_4.2.prediction_transcript Annotation source for Xenopus_tropicalis prediction_transcript DS_6555 Xenopus_tropicalis.JGI_4.2.reference Xenopus_tropicalis Reference server based on JGI_4.2 assembly. Contains 19549 top level entries. DS_6556 Xenopus_tropicalis.JGI_4.2.transcript Annotation source for Xenopus_tropicalis transcript DS_6557 Xenopus_tropicalis.JGI_4.2.translation Annotation source for Xenopus_tropicalis translation DS_6558 Ciona_intestinalis.JGI2.prediction_transcript Annotation source for Ciona_intestinalis prediction_transcript DS_6559 Ciona_intestinalis.JGI2.reference Ciona_intestinalis Reference server based on JGI2 assembly. Contains 4390 top level entries. DS_6560 Ciona_intestinalis.JGI2.transcript Annotation source for Ciona_intestinalis transcript DS_6561 Ciona_intestinalis.JGI2.translation Annotation source for Ciona_intestinalis translation DS_6562 Mus_musculus.NCBIM37.translation Annotation source for Mus_musculus translation DS_6563 Bos_taurus.Btau_4.0.prediction_transcript Annotation source for Bos_taurus prediction_transcript DS_6564 Bos_taurus.Btau_4.0.reference Bos_taurus Reference server based on Btau_4.0 assembly. Contains 12008 top level entries. DS_6565 Bos_taurus.Btau_4.0.transcript Annotation source for Bos_taurus transcript DS_6566 Bos_taurus.Btau_4.0.translation Annotation source for Bos_taurus translation DS_6567 Drosophila_melanogaster.BDGP5.25.karyotype Annotation source for Drosophila_melanogaster karyotype DS_6568 Drosophila_melanogaster.BDGP5.25.reference Drosophila_melanogaster Reference server based on BDGP5.25 assembly. Contains 15 top level entries. DS_6569 Drosophila_melanogaster.BDGP5.25.transcript Annotation source for Drosophila_melanogaster transcript DS_6570 Drosophila_melanogaster.BDGP5.25.translation Annotation source for Drosophila_melanogaster translation DS_6571 Gorilla_gorilla.gorGor3.prediction_transcript Annotation source for Gorilla_gorilla prediction_transcript DS_6572 Gorilla_gorilla.gorGor3.reference Gorilla_gorilla Reference server based on gorGor3 assembly. Contains 50196 top level entries. DS_6573 Gorilla_gorilla.gorGor3.transcript Annotation source for Gorilla_gorilla transcript DS_6574 Gorilla_gorilla.gorGor3.translation Annotation source for Gorilla_gorilla translation DS_6575 Homo_sapiens.GRCh37.translation Annotation source for Homo_sapiens translation DS_6576 Otolemur_garnettii.BUSHBABY1.prediction_transcript Annotation source for Otolemur_garnettii prediction_transcript DS_6577 Otolemur_garnettii.BUSHBABY1.reference Otolemur_garnettii Reference server based on BUSHBABY1 assembly. Contains 107969 top level entries. DS_6578 Otolemur_garnettii.BUSHBABY1.transcript Annotation source for Otolemur_garnettii transcript DS_6579 Otolemur_garnettii.BUSHBABY1.translation Annotation source for Otolemur_garnettii translation DS_6580 Pan_troglodytes.CHIMP2.1.prediction_transcript Annotation source for Pan_troglodytes prediction_transcript DS_6581 Pan_troglodytes.CHIMP2.1.reference Pan_troglodytes Reference server based on CHIMP2.1 assembly. Contains 52 top level entries. DS_6582 Pan_troglodytes.CHIMP2.1.transcript Annotation source for Pan_troglodytes transcript DS_6583 Pan_troglodytes.CHIMP2.1.translation Annotation source for Pan_troglodytes translation DS_6584 Saccharomyces_cerevisiae.EF3.reference Saccharomyces_cerevisiae Reference server based on EF3 assembly. Contains 18 top level entries. DS_6585 Saccharomyces_cerevisiae.EF3.transcript Annotation source for Saccharomyces_cerevisiae transcript DS_6586 Saccharomyces_cerevisiae.EF3.translation Annotation source for Saccharomyces_cerevisiae translation DS_6587 Myotis_lucifugus.MICROBAT1.prediction_transcript Annotation source for Myotis_lucifugus prediction_transcript DS_6588 Myotis_lucifugus.MICROBAT1.reference Myotis_lucifugus Reference server based on MICROBAT1 assembly. Contains 178934 top level entries. DS_6589 Myotis_lucifugus.MICROBAT1.transcript Annotation source for Myotis_lucifugus transcript DS_6590 Myotis_lucifugus.MICROBAT1.translation Annotation source for Myotis_lucifugus translation DS_6591 Saccharomyces_cerevisiae.EF2.reference Saccharomyces_cerevisiae Reference server based on EF2 assembly. Contains 18 top level entries. DS_6592 Saccharomyces_cerevisiae.EF2.transcript Annotation source for Saccharomyces_cerevisiae transcript DS_6593 Saccharomyces_cerevisiae.EF2.translation Annotation source for Saccharomyces_cerevisiae translation DS_6594 Pongo_pygmaeus.PPYG2.prediction_transcript Annotation source for Pongo_pygmaeus prediction_transcript DS_6595 Pongo_pygmaeus.PPYG2.reference Pongo_pygmaeus Reference server based on PPYG2 assembly. Contains 55 top level entries. DS_6596 Pongo_pygmaeus.PPYG2.transcript Annotation source for Pongo_pygmaeus transcript DS_6597 Pongo_pygmaeus.PPYG2.translation Annotation source for Pongo_pygmaeus translation DS_6598 Xenopus_tropicalis.JGI4.1.prediction_transcript Annotation source for Xenopus_tropicalis prediction_transcript DS_6599 Xenopus_tropicalis.JGI4.1.reference Xenopus_tropicalis Reference server based on JGI4.1 assembly. Contains 19501 top level entries. DS_6600 Xenopus_tropicalis.JGI4.1.transcript Annotation source for Xenopus_tropicalis transcript DS_6601 Xenopus_tropicalis.JGI4.1.translation Annotation source for Xenopus_tropicalis translation DS_6602 Anolis_carolinensis.AnoCar1.0.reference Anolis_carolinensis Reference server based on AnoCar1.0 assembly. Contains 7233 top level entries. DS_6603 Anolis_carolinensis.AnoCar1.0.transcript Annotation source for Anolis_carolinensis transcript DS_6604 Anolis_carolinensis.AnoCar1.0.translation Annotation source for Anolis_carolinensis translation DS_6605 Caenorhabditis_elegans.WS210.reference Caenorhabditis_elegans Reference server based on WS210 assembly. Contains 7 top level entries. DS_6606 Caenorhabditis_elegans.WS210.transcript Annotation source for Caenorhabditis_elegans transcript DS_6607 Caenorhabditis_elegans.WS210.translation Annotation source for Caenorhabditis_elegans translation DS_6608 Danio_rerio.Zv8.prediction_transcript Annotation source for Danio_rerio prediction_transcript DS_6609 Danio_rerio.Zv8.reference Danio_rerio Reference server based on Zv8 assembly. Contains 11624 top level entries. DS_6610 Danio_rerio.Zv8.transcript Annotation source for Danio_rerio transcript DS_6611 Danio_rerio.Zv8.translation Annotation source for Danio_rerio translation DS_6612 Bos_taurus.Btau_4.0.constrained_element Annotation source for Bos_taurus constrained_element DS_6613 Canis_familiaris.BROADD2.constrained_element Annotation source for Canis_familiaris constrained_element DS_6614 Cavia_porcellus.cavPor3.constrained_element Annotation source for Cavia_porcellus constrained_element DS_6615 Choloepus_hoffmanni.choHof1.constrained_element Annotation source for Choloepus_hoffmanni constrained_element DS_6616 Danio_rerio.Zv8.constrained_element Annotation source for Danio_rerio constrained_element DS_6617 Dasypus_novemcinctus.dasNov2.constrained_element Annotation source for Dasypus_novemcinctus constrained_element DS_6618 Dipodomys_ordii.dipOrd1.constrained_element Annotation source for Dipodomys_ordii constrained_element DS_6619 Drosophila_melanogaster.BDGP5.13.karyotype Annotation source for Drosophila_melanogaster karyotype DS_6620 Drosophila_melanogaster.BDGP5.13.reference Drosophila_melanogaster Reference server based on BDGP5.13 assembly. Contains 15 top level entries. DS_6621 Drosophila_melanogaster.BDGP5.13.transcript Annotation source for Drosophila_melanogaster transcript DS_6622 Drosophila_melanogaster.BDGP5.13.translation Annotation source for Drosophila_melanogaster translation DS_6623 Echinops_telfairi.TENREC.constrained_element Annotation source for Echinops_telfairi constrained_element DS_6624 Equus_caballus.EquCab2.constrained_element Annotation source for Equus_caballus constrained_element DS_6625 Erinaceus_europaeus.HEDGEHOG.constrained_element Annotation source for Erinaceus_europaeus constrained_element DS_6626 Felis_catus.CAT.constrained_element Annotation source for Felis_catus constrained_element DS_6627 Gallus_gallus.WASHUC2.constrained_element Annotation source for Gallus_gallus constrained_element DS_6628 Gasterosteus_aculeatus.BROADS1.constrained_element Annotation source for Gasterosteus_aculeatus constrained_element DS_6629 Gorilla_gorilla.gorGor3.constrained_element Annotation source for Gorilla_gorilla constrained_element DS_6630 Homo_sapiens.GRCh37.constrained_element Annotation source for Homo_sapiens constrained_element DS_6631 Loxodonta_africana.loxAfr3.constrained_element Annotation source for Loxodonta_africana constrained_element DS_6632 Macaca_mulatta.MMUL_1.constrained_element Annotation source for Macaca_mulatta constrained_element DS_6633 Microcebus_murinus.micMur1.constrained_element Annotation source for Microcebus_murinus constrained_element DS_6634 Monodelphis_domestica.BROADO5.constrained_element Annotation source for Monodelphis_domestica constrained_element DS_6635 Mus_musculus.NCBIM37.constrained_element Annotation source for Mus_musculus constrained_element DS_6636 Myotis_lucifugus.MICROBAT1.constrained_element Annotation source for Myotis_lucifugus constrained_element DS_6637 Ochotona_princeps.pika.constrained_element Annotation source for Ochotona_princeps constrained_element DS_6638 Ornithorhynchus_anatinus.OANA5.constrained_element Annotation source for Ornithorhynchus_anatinus constrained_element DS_6639 Oryctolagus_cuniculus.oryCun2.constrained_element Annotation source for Oryctolagus_cuniculus constrained_element DS_6640 Oryzias_latipes.MEDAKA1.constrained_element Annotation source for Oryzias_latipes constrained_element DS_6641 Otolemur_garnettii.BUSHBABY1.constrained_element Annotation source for Otolemur_garnettii constrained_element DS_6642 Pan_troglodytes.CHIMP2.1.constrained_element Annotation source for Pan_troglodytes constrained_element DS_6643 Pongo_pygmaeus.PPYG2.constrained_element Annotation source for Pongo_pygmaeus constrained_element DS_6644 Procavia_capensis.proCap1.constrained_element Annotation source for Procavia_capensis constrained_element DS_6645 Pteropus_vampyrus.pteVam1.constrained_element Annotation source for Pteropus_vampyrus constrained_element DS_6646 Rattus_norvegicus.RGSC3.4.constrained_element Annotation source for Rattus_norvegicus constrained_element DS_6647 Saccharomyces_cerevisiae.SGD1.01.reference Saccharomyces_cerevisiae Reference server based on SGD1.01 assembly. Contains 18 top level entries. DS_6648 Saccharomyces_cerevisiae.SGD1.01.transcript Annotation source for Saccharomyces_cerevisiae transcript DS_6649 Saccharomyces_cerevisiae.SGD1.01.translation Annotation source for Saccharomyces_cerevisiae translation DS_6650 Sorex_araneus.COMMON_SHREW1.constrained_element Annotation source for Sorex_araneus constrained_element DS_6651 Sus_scrofa.Sscrofa9.constrained_element Annotation source for Sus_scrofa constrained_element DS_6652 Takifugu_rubripes.FUGU4.constrained_element Annotation source for Takifugu_rubripes constrained_element DS_6653 Tarsius_syrichta.tarSyr1.constrained_element Annotation source for Tarsius_syrichta constrained_element DS_6654 Tupaia_belangeri.TREESHREW.constrained_element Annotation source for Tupaia_belangeri constrained_element DS_6655 Tursiops_truncatus.turTru1.constrained_element Annotation source for Tursiops_truncatus constrained_element DS_6656 Vicugna_pacos.vicPac1.constrained_element Annotation source for Vicugna_pacos constrained_element DS_6657 Caenorhabditis_elegans.WS200.reference Caenorhabditis_elegans Reference server based on WS200 assembly. Contains 7 top level entries. DS_6658 Caenorhabditis_elegans.WS200.transcript Annotation source for Caenorhabditis_elegans transcript DS_6659 Caenorhabditis_elegans.WS200.translation Annotation source for Caenorhabditis_elegans translation DS_6660 Callithrix_jacchus.calJac3.prediction_transcript Annotation source for Callithrix_jacchus prediction_transcript DS_6661 Callithrix_jacchus.calJac3.reference Callithrix_jacchus Reference server based on calJac3 assembly. Contains 16089 top level entries. DS_6662 Callithrix_jacchus.calJac3.transcript Annotation source for Callithrix_jacchus transcript DS_6663 Callithrix_jacchus.calJac3.translation Annotation source for Callithrix_jacchus translation DS_6664 Gorilla_gorilla.gorGor1.prediction_transcript Annotation source for Gorilla_gorilla prediction_transcript DS_6665 Gorilla_gorilla.gorGor1.reference Gorilla_gorilla Reference server based on gorGor1 assembly. Contains 572749 top level entries. DS_6666 Gorilla_gorilla.gorGor1.transcript Annotation source for Gorilla_gorilla transcript DS_6667 Gorilla_gorilla.gorGor1.translation Annotation source for Gorilla_gorilla translation DS_6668 Loxodonta_africana.loxAfr2.prediction_transcript Annotation source for Loxodonta_africana prediction_transcript DS_6669 Loxodonta_africana.loxAfr2.reference Loxodonta_africana Reference server based on loxAfr2 assembly. Contains 207608 top level entries. DS_6670 Loxodonta_africana.loxAfr2.transcript Annotation source for Loxodonta_africana transcript DS_6671 Loxodonta_africana.loxAfr2.translation Annotation source for Loxodonta_africana translation DS_6672 Oryctolagus_cuniculus.RABBIT.prediction_transcript Annotation source for Oryctolagus_cuniculus prediction_transcript DS_6673 Oryctolagus_cuniculus.RABBIT.reference Oryctolagus_cuniculus Reference server based on RABBIT assembly. Contains 196698 top level entries. DS_6674 Oryctolagus_cuniculus.RABBIT.transcript Annotation source for Oryctolagus_cuniculus transcript DS_6675 Oryctolagus_cuniculus.RABBIT.translation Annotation source for Oryctolagus_cuniculus translation DS_6676 Aedes_aegypti.AaegL1.reference Aedes_aegypti Reference server based on AaegL1 assembly. Contains 4758 top level entries. DS_6677 Aedes_aegypti.AaegL1.transcript Annotation source for Aedes_aegypti transcript DS_6678 Aedes_aegypti.AaegL1.translation Annotation source for Aedes_aegypti translation DS_6679 Anopheles_gambiae.AgamP3.karyotype Annotation source for Anopheles_gambiae karyotype DS_6680 Anopheles_gambiae.AgamP3.prediction_transcript Annotation source for Anopheles_gambiae prediction_transcript DS_6681 Anopheles_gambiae.AgamP3.reference Anopheles_gambiae Reference server based on AgamP3 assembly. Contains 173 top level entries. DS_6682 Anopheles_gambiae.AgamP3.transcript Annotation source for Anopheles_gambiae transcript DS_6683 Anopheles_gambiae.AgamP3.translation Annotation source for Anopheles_gambiae translation DS_6684 Drosophila_melanogaster.BDGP5.4.karyotype Annotation source for Drosophila_melanogaster karyotype DS_6685 Drosophila_melanogaster.BDGP5.4.reference Drosophila_melanogaster Reference server based on BDGP5.4 assembly. Contains 15 top level entries. DS_6686 Drosophila_melanogaster.BDGP5.4.transcript Annotation source for Drosophila_melanogaster transcript DS_6687 Drosophila_melanogaster.BDGP5.4.translation Annotation source for Drosophila_melanogaster translation DS_6688 Caenorhabditis_elegans.WS190.reference Caenorhabditis_elegans Reference server based on WS190 assembly. Contains 7 top level entries. DS_6689 Caenorhabditis_elegans.WS190.transcript Annotation source for Caenorhabditis_elegans transcript DS_6690 Caenorhabditis_elegans.WS190.translation Annotation source for Caenorhabditis_elegans translation DS_6691 Homo_sapiens.NCBI36.cagetags Annotation source for Homo_sapiens cagetags DS_6692 Homo_sapiens.NCBI36.ditags Annotation source for Homo_sapiens ditags DS_6693 Homo_sapiens.NCBI36.karyotype Annotation source for Homo_sapiens karyotype DS_6694 Homo_sapiens.NCBI36.prediction_transcript Annotation source for Homo_sapiens prediction_transcript DS_6695 Homo_sapiens.NCBI36.reference Homo_sapiens Reference server based on NCBI36 assembly. Contains 117 top level entries. DS_6696 Homo_sapiens.NCBI36.transcript Annotation source for Homo_sapiens transcript DS_6697 Homo_sapiens.NCBI36.translation Annotation source for Homo_sapiens translation DS_6698 Danio_rerio.ZFISH7.prediction_transcript Annotation source for Danio_rerio prediction_transcript DS_6699 Danio_rerio.ZFISH7.reference Danio_rerio Reference server based on ZFISH7 assembly. Contains 5036 top level entries. DS_6700 Danio_rerio.ZFISH7.transcript Annotation source for Danio_rerio transcript DS_6701 Danio_rerio.ZFISH7.translation Annotation source for Danio_rerio translation DS_6702 Acyrthosiphon_pisum.Acyr2.reference Acyrthosiphon_pisum Reference server based on Acyr2 assembly. Contains 22798 top level entries. DS_6703 Acyrthosiphon_pisum.Acyr2.transcript Annotation source for Acyrthosiphon_pisum transcript DS_6704 Acyrthosiphon_pisum.Acyr2.translation Annotation source for Acyrthosiphon_pisum translation DS_6705 Amphimedon_queenslandica.Aqu1.reference Amphimedon_queenslandica Reference server based on Aqu1 assembly. Contains 13397 top level entries. DS_6706 Amphimedon_queenslandica.Aqu1.transcript Annotation source for Amphimedon_queenslandica transcript DS_6707 Amphimedon_queenslandica.Aqu1.translation Annotation source for Amphimedon_queenslandica translation DS_6708 Atta_cephalotes.Acep1.reference Atta_cephalotes Reference server based on Acep1 assembly. Contains 2835 top level entries. DS_6709 Atta_cephalotes.Acep1.transcript Annotation source for Atta_cephalotes transcript DS_6710 Atta_cephalotes.Acep1.translation Annotation source for Atta_cephalotes translation DS_6711 Bombyx_mori.Bmor1.reference Bombyx_mori Reference server based on Bmor1 assembly. Contains 43622 top level entries. DS_6712 Bombyx_mori.Bmor1.transcript Annotation source for Bombyx_mori transcript DS_6713 Bombyx_mori.Bmor1.translation Annotation source for Bombyx_mori translation DS_6714 Daphnia_pulex.Dappu1.reference Daphnia_pulex Reference server based on Dappu1 assembly. Contains 5191 top level entries. DS_6715 Daphnia_pulex.Dappu1.transcript Annotation source for Daphnia_pulex transcript DS_6716 Daphnia_pulex.Dappu1.translation Annotation source for Daphnia_pulex translation DS_6717 Multi.Ensembl-GeneID.spine Gene Summary Annotation source DS_6718 Nematostella_vectensis.Nemve1.reference Nematostella_vectensis Reference server based on Nemve1 assembly. Contains 10804 top level entries. DS_6719 Nematostella_vectensis.Nemve1.transcript Annotation source for Nematostella_vectensis transcript DS_6720 Nematostella_vectensis.Nemve1.translation Annotation source for Nematostella_vectensis translation DS_6721 Pristionchus_pacificus.pp1.reference Pristionchus_pacificus Reference server based on pp1 assembly. Contains 5106 top level entries. DS_6722 Pristionchus_pacificus.pp1.transcript Annotation source for Pristionchus_pacificus transcript DS_6723 Pristionchus_pacificus.pp1.translation Annotation source for Pristionchus_pacificus translation DS_6724 Schistosoma_mansoni.sma_v3.1.reference Schistosoma_mansoni Reference server based on sma_v3.1 assembly. Contains 19022 top level entries. DS_6725 Schistosoma_mansoni.sma_v3.1.transcript Annotation source for Schistosoma_mansoni transcript DS_6726 Schistosoma_mansoni.sma_v3.1.translation Annotation source for Schistosoma_mansoni translation DS_6727 Strongylocentrotus_purpuratus.Spur2.5.reference Strongylocentrotus_purpuratus Reference server based on Spur2.5 assembly. Contains 77726 top level entries. DS_6728 Strongylocentrotus_purpuratus.Spur2.5.transcript Annotation source for Strongylocentrotus_purpuratus transcript DS_6729 Strongylocentrotus_purpuratus.Spur2.5.translation Annotation source for Strongylocentrotus_purpuratus translation DS_6730 Tribolium_castaneum.Tcas3.reference Tribolium_castaneum Reference server based on Tcas3 assembly. Contains 11 top level entries. DS_6731 Tribolium_castaneum.Tcas3.transcript Annotation source for Tribolium_castaneum transcript DS_6732 Tribolium_castaneum.Tcas3.translation Annotation source for Tribolium_castaneum translation DS_6733 Trichinella_spiralis.Tspiralis1.reference Trichinella_spiralis Reference server based on Tspiralis1 assembly. Contains 6863 top level entries. DS_6734 Trichinella_spiralis.Tspiralis1.transcript Annotation source for Trichinella_spiralis transcript DS_6735 Trichinella_spiralis.Tspiralis1.translation Annotation source for Trichinella_spiralis translation DS_6736 Trichoplax_adhaerens.TRIAD1.reference Trichoplax_adhaerens Reference server based on TRIAD1 assembly. Contains 1415 top level entries. DS_6737 Trichoplax_adhaerens.TRIAD1.transcript Annotation source for Trichoplax_adhaerens transcript DS_6738 Trichoplax_adhaerens.TRIAD1.translation Annotation source for Trichoplax_adhaerens translation DS_6739 RefSeq_rat_3_4 RefSeq for Rat 3.4 DS_6740 Mouse fosmids m38 WIBR-1 mouse Fosmid end read sequences have been mapped to the GRCm38 Mouse assembly using SSAHA. DS_6742 RRBS HSMM Reduced representation bisulphite sequencing (RRBS) from ENCODE for Human Skeletal Muscle Myoblasts (merged replicates). A colour gradient indicates methylation level: dark blue indicates highly methylated areas, through green to yellow, which indicates low methylation. DS_6743 Micer clones m38 MHPP/MHPN library end-sequences have been mapped to GRCm38 mouse assembly using SSAHA alignment of the reads. DS_6744 129S7/AB2.2 clones m38 129S7/AB2.2 BAC Library, mapped to the GRCm38 mouse assembly. The 129S7/AB2.2 mouse BAC library end-sequences have been mapped to the GRCm38 mouse assembly using SSAHA alignment of the reads. DS_6746 MSM clones m38 MSM BAC Library, mapped to the GRCm38 mouse assembly. The MSM mouse BAC library end-sequences have been mapped to the GRCm38 mouse assembly using SSAHA alignment of the reads. DS_6748 DIL NOD clones m38 DIL NOD BAC Library, mapped to the GRCm38 mouse assembly. The NOD/MrkTac mouse BAC library end-sequences have been mapped to the GRCm38 mouse assembly using SSAHA alignment of the reads. DS_6750 BAC map m38 BAC Clones (RP23/24 libraries) DAS Source For GRCm38 C57BL/6J Mouse Assembly: End read sequences have been mapped to the GRCm38 Mouse assembly using SSAHA. DS_6752 CHORI29 clones m38 CHORI-29 NOD BAC Library, mapped to the GRCm38 mouse assembly. The NOD/ShiLtJ mouse BAC library end-sequences have been mapped to the GRCm38 mouse assembly using SSAHA alignment of the reads. DS_6754 GenomeRNAi Phenotypes RNAi knockdown phenotypes from the GenomeRNAi database for Homo Sapiens DS_6755 GenomeRNAi Reagents RNAi reagents from the GenomeRNAi database for Homo Sapiens DS_6756 GenomeRNAi Reagents RNAi reagents from the GenomeRNAi database for Drosophila Melanogaster DS_6757 GenomeRNAi Phenotypes RNAi knockdown phenotypes from the GenomeRNAi database for Drosophila Melanogaster |
Go to the output files for this example
Command line arguments
Generate server cache file for DAS servers or for the DAS registry
Version: EMBOSS:6.6.0.0
Standard (Mandatory) qualifiers:
[-cachefile] outfile [server.$(servername)] Server cache output
file
Additional (Optional) qualifiers:
-sequencesourcesonly boolean [N] Display DAS sequence sources only
-outfile outfile [stdout] Output file name
Advanced (Unprompted) qualifiers:
-host string [www.dasregistry.org] DAS registry/server
host location (Any string)
-path string [/das] DAS registry/server path on
registry/server host (Any string)
-port integer [80] DAS registry/server port on
registry/server host (Any integer value)
-servername string [das] Name of a DAS server defined in EMBOSS
resource files (Any string)
Associated qualifiers:
"-outfile" associated qualifiers
-odirectory string Output directory
"-cachefile" associated qualifiers
-odirectory1 string Output directory
General qualifiers:
-auto boolean Turn off prompts
-stdout boolean Write first file to standard output
-filter boolean Read first file from standard input, write
first file to standard output
-options boolean Prompt for standard and additional values
-debug boolean Write debug output to program.dbg
-verbose boolean Report some/full command line options
-help boolean Report command line options and exit. More
information on associated and general
qualifiers can be found with -help -verbose
-warning boolean Report warnings
-error boolean Report errors
-fatal boolean Report fatal errors
-die boolean Report dying program messages
-version boolean Report version number and exit
|
| Qualifier | Type | Description | Allowed values | Default |
|---|---|---|---|---|
| Standard (Mandatory) qualifiers | ||||
| [-cachefile] (Parameter 1) |
outfile | Server cache output file | Output file | server.$(servername) |
| Additional (Optional) qualifiers | ||||
| -sequencesourcesonly | boolean | Display DAS sequence sources only | Boolean value Yes/No | No |
| -outfile | outfile | Output file name | Output file | stdout |
| Advanced (Unprompted) qualifiers | ||||
| -host | string | DAS registry/server host location | Any string | www.dasregistry.org |
| -path | string | DAS registry/server path on registry/server host | Any string | /das |
| -port | integer | DAS registry/server port on registry/server host | Any integer value | 80 |
| -servername | string | Name of a DAS server defined in EMBOSS resource files | Any string | das |
| Associated qualifiers | ||||
| "-outfile" associated outfile qualifiers | ||||
| -odirectory | string | Output directory | Any string | |
| "-cachefile" associated outfile qualifiers | ||||
| -odirectory1 -odirectory_cachefile |
string | Output directory | Any string | |
| General qualifiers | ||||
| -auto | boolean | Turn off prompts | Boolean value Yes/No | N |
| -stdout | boolean | Write first file to standard output | Boolean value Yes/No | N |
| -filter | boolean | Read first file from standard input, write first file to standard output | Boolean value Yes/No | N |
| -options | boolean | Prompt for standard and additional values | Boolean value Yes/No | N |
| -debug | boolean | Write debug output to program.dbg | Boolean value Yes/No | N |
| -verbose | boolean | Report some/full command line options | Boolean value Yes/No | Y |
| -help | boolean | Report command line options and exit. More information on associated and general qualifiers can be found with -help -verbose | Boolean value Yes/No | N |
| -warning | boolean | Report warnings | Boolean value Yes/No | Y |
| -error | boolean | Report errors | Boolean value Yes/No | Y |
| -fatal | boolean | Report fatal errors | Boolean value Yes/No | Y |
| -die | boolean | Report dying program messages | Boolean value Yes/No | Y |
| -version | boolean | Report version number and exit | Boolean value Yes/No | N |
Input file format
cachedas contacts the DAS registry for details of registered servers.
Output file format
cachedas writes a server cache file which can be saved in the user's .embossdata directory or, for a system administrator, stored in the site-wide share/EMBOSS/ directory.Output files for usage example
File: qatests.server.dasregistry
# qatests.server.dasregistry 2013-07-15 12:00:00 DBNAME DS_114_signalp [ method: "das" type: "Protfeatures" format: "dasgff" url: "http://das.cbs.dtu.dk:9000/das/signalp" example: "P15498" comment: "SignalP (http://www.cbs.dtu.dk/services/SignalP) predictions for UniProt." hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME netphos [ method: "das" type: "Protfeatures" format: "dasgff" url: "http://das.cbs.dtu.dk:9000/das/netphos" example: "P15498" comment: "NetPhos (http://www.cbs.dtu.dk/services/NetPhos) predictions for UniProt." hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME prop [ method: "das" type: "Protfeatures" format: "dasgff" url: "http://das.cbs.dtu.dk:9000/das/prop" example: "P15498" comment: "ProP (http://www.cbs.dtu.dk/services/ProP) predictions for UniProt." hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME transmem_pred [ method: "das" type: "Protfeatures" format: "dasgff" url: "http://pongo.biocomp.unibo.it/das/dasdb" example: "P15498" comment: "Membrane protein annotation. Presenty This DAS server contains UNIPROT and IPI human proteins. The annotation si done using 4 different predictors: TMHMM2.0, MEMSAT, ENSEMBLE_1.0 and PRODIV_TMHMM_0.91" hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] [Part of this file has been deleted for brevity] method: "das" type: "Nucfeatures" taxon: "9606" format: "dasgff" url: "http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiHumanPhenotypeDatasource" example: "2[100000:500000]" comment: "RNAi knockdown phenotypes from the GenomeRNAi database for Homo Sapiens" hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME DS_6755_GenomeRNAi_Reagents [ method: "das" type: "Nucfeatures" taxon: "9606" format: "dasgff" url: "http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiHumanReagentDatasource" example: "2[100000:500000]" comment: "RNAi reagents from the GenomeRNAi database for Homo Sapiens" hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME DS_6756_GenomeRNAi_Reagents [ method: "das" type: "Nucfeatures" taxon: "7227" format: "dasgff" url: "http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiDrosoReagentDatasource" example: "2L[100000:101999]" comment: "RNAi reagents from the GenomeRNAi database for Drosophila Melanogaster" hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] DBNAME DS_6757_GenomeRNAi_Phenotypes [ method: "das" type: "Nucfeatures" taxon: "7227" format: "dasgff" url: "http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiDrosoPhenotypeDatasource" example: "2L[100000:101999]" comment: "RNAi knockdown phenotypes from the GenomeRNAi database for Drosophila Melanogaster" hasaccession: "N" identifier: "segment" fields: "segment,type,category,categorize,feature_id" ] |
Data files
None.Notes
None.References
None.Warnings
None.Diagnostic Error Messages
None.Exit status
It always exits with status 0.Known bugs
None.See also
| Program name | Description |
|---|---|
| cachedbfetch | Generate server cache file for Dbfetch/WSDbfetch data sources |
| cacheebeyesearch | Generate server cache file for EB-eye search domains |
| cacheensembl | Generate server cache file for an Ensembl server |
| dbtell | Display information about a public database |
| servertell | Display information about a public server |
| showdb | Display information on configured databases |
| showserver | Display information on configured servers |
Author(s)
Peter RiceEuropean Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK
Please report all bugs to the EMBOSS bug team (emboss-bug © emboss.open-bio.org) not to the original author.