EMBOSS explorer

sigscanlig

Search ligand-signature library & write hits (LHF file). (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

inappropriate datatype dirlist

Database of query sequences. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Scoring matrix. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
Select mode of scoring ligands.
Gap insertion penalty (default is 10.0 for any sequence)
Gap extension penalty (default is 0.5 for any sequence)
Select number
Advanced section
Output section
Max. number of hits to output
Whether to consider a max. number of top-scoring hits only for each ligand.?
Max. number of top-scoring hits to consider for each ligand.
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.