EMBOSS explorer

profgen

Generates various profiles for each alignment in a directory. (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
Location of scop alignment files (input)
Extension of scop alignment files
Required section
Select type
Enter threshold reporting percentage

Residue substitution matrix. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Gap insertion penalty
Gap extension penalty
Output section
Location of simple profile files (output)
Extention of simple profile files
Location of Gribskov profile files (output)
Extension of Gribskov profile files
Location of Henikoff profile files (output)
Extention of Henikoff profile files
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.