EMBOSS explorer

dotmatcher

Draw a threshold dotplot of two sequences (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:

Matrix file. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Additional section
Window size over which to test threshhold
Threshold
Output section
Stretch plot?
Output graphic format
Graphic title
Graphic subtitle
X axis title
Y axis title
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.